RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W YCR024C-BQ3E7Z8 88 aa2.03□□□□□ -2.08
RPF1YHR088W TY1B-AO13527 1196 aaKnown RBP2.02□□□□□ -2.09
RPF1YHR088W ATP1P07251 545 aaKnown RBP2.02□□□□□ -2.09
RPF1YHR088W ZIP1P31111 875 aa2.02□□□□□ -2.09
RPF1YHR088W ERG3P32353 365 aa2.02□□□□□ -2.09
RPF1YHR088W ECM34P38728 170 aa2.02□□□□□ -2.09
RPF1YHR088W HST4P53688 370 aa2.02□□□□□ -2.09
RPF1YHR088W KAP120Q02932 1032 aa2.02□□□□□ -2.09
RPF1YHR088W RPN9Q04062 393 aaKnown RBP2.02□□□□□ -2.09
RPF1YHR088W DON1Q05610 365 aa2.02□□□□□ -2.09
RPF1YHR088W SNT309Q06091 175 aaPredicted RBP2.02□□□□□ -2.09
RPF1YHR088W YDL121CQ07541 149 aa2.02□□□□□ -2.09
RPF1YHR088W YDL199CQ12407 687 aa2.02□□□□□ -2.09
RPF1YHR088W YOL159C-AQ3E769 90 aa2.02□□□□□ -2.09
RPF1YHR088W CMK2P22517 447 aa2.01□□□□□ -2.09
RPF1YHR088W SAS3P34218 831 aa2.01□□□□□ -2.09
RPF1YHR088W MRPL19P53875 158 aa2.01□□□□□ -2.09
RPF1YHR088W TAF11Q04226 346 aa2.01□□□□□ -2.09
RPF1YHR088W HMS1Q12398 434 aa2.01□□□□□ -2.09
RPF1YHR088W PGA3Q12746 312 aaKnown RBP2.01□□□□□ -2.09
RPF1YHR088W RED1P14291 827 aa2□□□□□ -2.09
RPF1YHR088W NOC2P39744 710 aaKnown RBP2□□□□□ -2.09
RPF1YHR088W GAT2P40209 560 aa2□□□□□ -2.09
RPF1YHR088W YGR117CP53270 476 aa2□□□□□ -2.09
RPF1YHR088W ENT5Q03769 411 aaKnown RBP2□□□□□ -2.09
RPF1YHR088W TIR4Q12218 487 aaPredicted RBP2□□□□□ -2.09
RPF1YHR088W SFI1Q12369 946 aa2□□□□□ -2.09
RPF1YHR088W SAL1D6W196 494 aa1.99□□□□□ -2.09
RPF1YHR088W REC107P21651 314 aa1.99□□□□□ -2.09
RPF1YHR088W BRF1P29056 596 aa1.99□□□□□ -2.09
RPF1YHR088W AGA2P32781 87 aa1.99□□□□□ -2.09
RPF1YHR088W NFU1P32860 256 aa1.99□□□□□ -2.09
RPF1YHR088W SKT5P34226 696 aa1.99□□□□□ -2.09
RPF1YHR088W TOM22P49334 152 aa1.99□□□□□ -2.09
RPF1YHR088W ARX1Q03862 593 aaKnown RBP1.99□□□□□ -2.09
RPF1YHR088W YMR130WQ04223 302 aa1.99□□□□□ -2.09
RPF1YHR088W DCS1Q06151 350 aa1.99□□□□□ -2.09
RPF1YHR088W HIF1Q12373 385 aa1.99□□□□□ -2.09
RPF1YHR088W PCL9Q12477 304 aa1.99□□□□□ -2.09
RPF1YHR088W YPR096CO13587 100 aa1.98□□□□□ -2.09
RPF1YHR088W ALG1P16661 449 aa1.98□□□□□ -2.09
RPF1YHR088W SPR6Q01684 191 aa1.98□□□□□ -2.09
RPF1YHR088W PRP42Q03776 544 aaKnown RBP1.98□□□□□ -2.09
RPF1YHR088W TSR2Q06672 205 aaKnown RBP1.98□□□□□ -2.09
RPF1YHR088W SFM1Q12314 213 aa1.98□□□□□ -2.09
RPF1YHR088W URA4P20051 364 aa1.97□□□□□ -2.09
RPF1YHR088W AST1P35183 429 aa1.97□□□□□ -2.09
RPF1YHR088W TRR2P38816 342 aa1.97□□□□□ -2.09
RPF1YHR088W MMF1P40185 145 aaKnown RBP1.97□□□□□ -2.09
RPF1YHR088W TRF5P48561 642 aaKnown RBP1.97□□□□□ -2.09
RPF1YHR088W RPT4P53549 437 aaKnown RBP1.97□□□□□ -2.09
RPF1YHR088W ZRG17P53735 605 aa1.97□□□□□ -2.09
RPF1YHR088W TRM112P53738 135 aaPredicted RBP1.97□□□□□ -2.09
RPF1YHR088W MSC3Q05812 728 aa1.97□□□□□ -2.09
RPF1YHR088W HRT1Q08273 121 aa1.97□□□□□ -2.09
RPF1YHR088W DDC1Q08949 612 aa1.97□□□□□ -2.09
RPF1YHR088W ISN1Q99312 450 aa1.97□□□□□ -2.09
RPF1YHR088W YRF1-4O13559 1382 aa1.97□□□□□ -2.09
RPF1YHR088W COX3P00420 269 aa1.96□□□□□ -2.1
RPF1YHR088W DST1P07273 309 aa1.96□□□□□ -2.1
RPF1YHR088W SSC1P0CS90 654 aaKnown RBP1.96□□□□□ -2.1
RPF1YHR088W EPT1P22140 391 aa1.96□□□□□ -2.1
RPF1YHR088W OLA1P38219 394 aaKnown RBP1.96□□□□□ -2.1
RPF1YHR088W ECM8P38246 354 aa1.96□□□□□ -2.1
RPF1YHR088W SHE3P38272 425 aaKnown RBP1.96□□□□□ -2.1
RPF1YHR088W FHL1P39521 936 aa1.96□□□□□ -2.1
RPF1YHR088W YER079WP40052 210 aaKnown RBP1.96□□□□□ -2.1
RPF1YHR088W YJL144WP47009 104 aa1.96□□□□□ -2.1
RPF1YHR088W SEH1P53011 349 aaKnown RBP1.96□□□□□ -2.1
RPF1YHR088W VEL1P53058 206 aa1.96□□□□□ -2.1
RPF1YHR088W OCA2P53949 197 aa1.96□□□□□ -2.1
RPF1YHR088W REX2P54964 269 aaKnown RBP1.96□□□□□ -2.1
RPF1YHR088W PRP38Q00723 242 aaPredicted RBP1.96□□□□□ -2.1
RPF1YHR088W ACL4Q03771 387 aa1.96□□□□□ -2.1
RPF1YHR088W VTI1Q04338 217 aa1.96□□□□□ -2.1
RPF1YHR088W MEX67Q99257 599 aaKnown RBP1.96□□□□□ -2.1
RPF1YHR088W YOL085CQ99345 113 aa1.96□□□□□ -2.1
RPF1YHR088W RPS18AP0CX55 146 aaKnown RBP1.95□□□□□ -2.1
RPF1YHR088W RPS18BP0CX56 146 aaPredicted RBP1.95□□□□□ -2.1
RPF1YHR088W CKA2P19454 339 aa1.95□□□□□ -2.1
RPF1YHR088W YCR051WP25631 222 aa1.95□□□□□ -2.1
RPF1YHR088W LDS1P31379 325 aa1.95□□□□□ -2.1
RPF1YHR088W SPO23P33757 523 aa1.95□□□□□ -2.1
RPF1YHR088W MCR1P36060 302 aaKnown RBP1.95□□□□□ -2.1
RPF1YHR088W YLR177WQ06251 628 aa1.95□□□□□ -2.1
RPF1YHR088W SCM3Q12334 223 aa1.95□□□□□ -2.1
RPF1YHR088W MTR10Q99189 972 aa1.95□□□□□ -2.1
RPF1YHR088W CLB1P24868 471 aa1.94□□□□□ -2.1
RPF1YHR088W HSP104P31539 908 aaKnown RBP1.94□□□□□ -2.1
RPF1YHR088W TOA1P32773 286 aa1.94□□□□□ -2.1
RPF1YHR088W PDC2P32896 925 aa1.94□□□□□ -2.1
RPF1YHR088W SRB2P34162 210 aa1.94□□□□□ -2.1
RPF1YHR088W FRM2P37261 193 aa1.94□□□□□ -2.1
RPF1YHR088W NDE1P40215 560 aa1.94□□□□□ -2.1
RPF1YHR088W KEG1P43614 200 aa1.94□□□□□ -2.1
RPF1YHR088W VAC7P53950 1165 aa1.94□□□□□ -2.1
RPF1YHR088W PRP3Q03338 469 aaPredicted RBP1.94□□□□□ -2.1
RPF1YHR088W YMR010WQ03687 405 aa1.94□□□□□ -2.1
RPF1YHR088W YDR115WQ04598 105 aa1.94□□□□□ -2.1
RPF1YHR088W MRX8Q05473 314 aa1.94□□□□□ -2.1
Retrieved 100 of 5,963 RNA–protein pairs in 25.5 ms