RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	CTF3	Q12748	733 aa		3.76	□□□□□ -1.81
UBX5	YDR330W	RIF1	P29539	1916 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	CMD1	P06787	147 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	GLN3	P18494	730 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	PRP2	P20095	876 aa	Predicted RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	MRPL25	P23369	157 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	PPH22	P23595	377 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	SPB1	P25582	841 aa	Predicted RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	MGT1	P26188	188 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	TPS2	P31688	896 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	PUP2	P32379	260 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	EFB1	P32471	206 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	SWC5	P38326	303 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	YHR054C	P38780	354 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	MKT1	P40850	830 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	ATP22	P50273	684 aa	Predicted RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	DUG3	P53871	357 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	YNL144C	P53907	740 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	HOT1	Q03213	719 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	YMR027W	Q04371	470 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	PRM6	Q04705	352 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	FAR8	Q05040	523 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	THI7	Q05998	598 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	FRE3	Q08905	711 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	YPL225W	Q08971	146 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	SPE3	Q12074	293 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	BRR1	Q99177	341 aa	Predicted RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	JIP3	O13555	125 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	CHS1	P08004	1131 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	SPS4	P09937	338 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	PUT4	P15380	627 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	RPB8	P20436	146 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	URE2	P23202	354 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	IDH2	P28241	369 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	RAD14	P28519	371 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	NIP1	P32497	812 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	RPN2	P32565	945 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	TOA1	P32773	286 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	PEX2	P32800	271 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	PPZ2	P33329	710 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	MTR2	P34232	184 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	YBR062C	P38239	180 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	RIX1	P38883	763 aa	Predicted RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	ASG7	P46993	209 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	PYK2	P52489	506 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	ADA2	Q02336	434 aa		3.75	□□□□□ -1.81
UBX5	YDR330W	MZM1	Q03429	123 aa	Predicted RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	ADE13	Q05911	482 aa	Known RBP	3.75	□□□□□ -1.81
UBX5	YDR330W	COR1	P07256	457 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	PMR1	P13586	950 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	SNA3	P14359	133 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	SLY1	P22213	666 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	SNT1	P25357	1226 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	ELO2	P25358	347 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	COQ3	P27680	312 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	MEI4	P29467	408 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	SEC1	P30619	724 aa	Known RBP	3.74	□□□□□ -1.81
UBX5	YDR330W	AFG1	P32317	509 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	ARA1	P38115	344 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	ROT2	P38138	954 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	YBR032W	P38223	100 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	MED8	P38304	223 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	UBA4	P38820	440 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	SPC97	P38863	823 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	MBB1	P39534	108 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	YER186C	P40101	306 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	YIL054W	P40524	105 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	VMA13	P41807	478 aa	Known RBP	3.74	□□□□□ -1.81
UBX5	YDR330W	SNG1	P46950	547 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	ATG27	P46989	271 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	AIM22	P47051	409 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	YGR149W	P48236	432 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	YNL247W	P53852	767 aa	Known RBP	3.74	□□□□□ -1.81
UBX5	YDR330W	ALG11	P53954	548 aa	Known RBP	3.74	□□□□□ -1.81
UBX5	YDR330W	YNL040W	P53960	456 aa	Predicted RBP	3.74	□□□□□ -1.81
UBX5	YDR330W	SKO1	Q02100	647 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	YVH1	Q02256	364 aa	Known RBP	3.74	□□□□□ -1.81
UBX5	YDR330W	YMR160W	Q03823	816 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	ARO80	Q04052	950 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	ARP10	Q04549	284 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	CDD1	Q06549	142 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	MCP2	Q06567	569 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	CMS1	Q07897	291 aa	Known RBP	3.74	□□□□□ -1.81
UBX5	YDR330W	DIS3	Q08162	1001 aa	Known RBP	3.74	□□□□□ -1.81
UBX5	YDR330W	PFA4	Q12006	378 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	VPS54	Q12071	889 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	3.74	□□□□□ -1.81	not detected
UBX5	YDR330W	EMP46	Q12396	444 aa		3.74	□□□□□ -1.81
UBX5	YDR330W	ADE4	P04046	510 aa	Known RBP	3.73	□□□□□ -1.81
UBX5	YDR330W	RHO2	P06781	192 aa		3.73	□□□□□ -1.81
UBX5	YDR330W	SRB2	P34162	210 aa		3.73	□□□□□ -1.81
UBX5	YDR330W	SWH1	P35845	1188 aa		3.73	□□□□□ -1.81
UBX5	YDR330W	PIM1	P36775	1133 aa		3.73	□□□□□ -1.81
UBX5	YDR330W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	3.73	□□□□□ -1.81	not detected
UBX5	YDR330W	SLM4	P38247	162 aa		3.73	□□□□□ -1.81
UBX5	YDR330W	DSE1	P40077	573 aa		3.73	□□□□□ -1.81
UBX5	YDR330W	LAM5	P43560	674 aa		3.73	□□□□□ -1.81
UBX5	YDR330W	YJR054W	P47114	497 aa		3.73	□□□□□ -1.81
UBX5	YDR330W	ELP3	Q02908	557 aa	Known RBP	3.73	□□□□□ -1.81
UBX5	YDR330W	CWC21	Q03375	135 aa	Known RBP	3.73	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 25.1 ms