Protein–RNA interactions for Protein: P53960

YNL040W, Putative alanyl-tRNA editing protein alaX, yeastyeast

Predicted RBP Predictions only

Length 456 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YNL040WP53960 YML009W-BYML009W-B 477 nt21.25■□□□□ 0.99
YNL040WP53960 NSR1YGR159C 1245 nt21.21■□□□□ 0.99
YNL040WP53960 NOP1YDL014W 984 nt20.62■□□□□ 0.89
YNL040WP53960 YKL036CYKL036C 393 nt18.95■□□□□ 0.62
YNL040WP53960 MDJ1YFL016C 1536 nt18.91■□□□□ 0.62
YNL040WP53960 Q0297Q0297 156 nt18.04■□□□□ 0.48
YNL040WP53960 SRX1YKL086W 384 nt18.02■□□□□ 0.48
YNL040WP53960 YJL027CYJL027C 417 nt17.67■□□□□ 0.42
YNL040WP53960 SCS3YGL126W 1143 nt17.2■□□□□ 0.34
YNL040WP53960 YCR051WYCR051W 669 nt17.08■□□□□ 0.32
YNL040WP53960 DBP2YNL112W 1641 nt16.71■□□□□ 0.27
YNL040WP53960 YOL085CYOL085C 342 nt16.43■□□□□ 0.22
YNL040WP53960 TRN1tP(UGG)A 72 nt16.35■□□□□ 0.21
YNL040WP53960 SUF9tP(UGG)F 72 nt16.35■□□□□ 0.21
YNL040WP53960 SUF8tP(UGG)H 72 nt16.35■□□□□ 0.21
YNL040WP53960 tP(UGG)LtP(UGG)L 72 nt16.35■□□□□ 0.21
YNL040WP53960 SUF7tP(UGG)M 72 nt16.35■□□□□ 0.21
YNL040WP53960 tP(UGG)N1tP(UGG)N1 72 nt16.35■□□□□ 0.21
YNL040WP53960 tP(UGG)N2tP(UGG)N2 72 nt16.35■□□□□ 0.21
YNL040WP53960 tP(UGG)O1tP(UGG)O1 72 nt16.35■□□□□ 0.21
YNL040WP53960 SUF11tP(UGG)O2 72 nt16.35■□□□□ 0.21
YNL040WP53960 PKP1YIL042C 1185 nt16.19■□□□□ 0.18
YNL040WP53960 CCC1YLR220W 969 nt16.19■□□□□ 0.18
YNL040WP53960 RPP1BYDL130W 321 nt16.18■□□□□ 0.18
YNL040WP53960 YBR190WYBR190W 312 nt16.14■□□□□ 0.17
YNL040WP53960 RTC3YHR087W 336 nt15.77■□□□□ 0.12
YNL040WP53960 RVS167YDR388W 1449 nt15.67■□□□□ 0.1
YNL040WP53960 SCJ1YMR214W 1134 nt15.59■□□□□ 0.09
YNL040WP53960 PET122YER153C 765 nt15.48■□□□□ 0.07
YNL040WP53960 tP(UGG)O3tP(UGG)O3 72 nt15.45■□□□□ 0.06
YNL040WP53960 ATS1YAL020C 1002 nt15.36■□□□□ 0.05
YNL040WP53960 SCR1SCR1 522 nt15.26■□□□□ 0.03
YNL040WP53960 SSA3YBL075C 1950 nt15.15■□□□□ 0.02
YNL040WP53960 SHR5YOL110W 714 nt15.11■□□□□ 0.01
YNL040WP53960 RRN5YLR141W 1092 nt15.03■□□□□ -0
YNL040WP53960 YDJ1YNL064C 1230 nt14.94□□□□□ -0.02
YNL040WP53960 PUT4YOR348C 1884 nt14.83□□□□□ -0.04
YNL040WP53960 URN1YPR152C 1398 nt14.74□□□□□ -0.05
YNL040WP53960 YER088W-BYER088W-B 147 nt14.73□□□□□ -0.05
YNL040WP53960 DEP1YAL013W 1218 nt14.72□□□□□ -0.05
YNL040WP53960 RSB1YOR049C 1065 nt14.68□□□□□ -0.06
YNL040WP53960 GAR1YHR089C 618 nt14.62□□□□□ -0.07
YNL040WP53960 OPI9YLR338W 858 nt14.54□□□□□ -0.08
YNL040WP53960 RPN10YHR200W 807 nt14.48□□□□□ -0.09
YNL040WP53960 SAH1YER043C 1350 nt14.47□□□□□ -0.09
YNL040WP53960 YNL208WYNL208W 600 nt14.47□□□□□ -0.09
YNL040WP53960 ARE1YCR048W 1833 nt14.45□□□□□ -0.1
YNL040WP53960 POA1YBR022W 534 nt14.34□□□□□ -0.11
YNL040WP53960 PST2YDR032C 597 nt14.25□□□□□ -0.13
YNL040WP53960 YHR049C-AYHR049C-A 297 nt14.25□□□□□ -0.13
YNL040WP53960 TIR1YER011W 765 nt14.13□□□□□ -0.15
YNL040WP53960 PUN1YLR414C 792 nt14.12□□□□□ -0.15
YNL040WP53960 BSC6YOL137W 1494 nt14.12□□□□□ -0.15
YNL040WP53960 YJR018WYJR018W 363 nt14.06□□□□□ -0.16
YNL040WP53960 SSA1YAL005C 1929 nt13.99□□□□□ -0.17
YNL040WP53960 PTC2YER089C 1395 nt13.97□□□□□ -0.17
YNL040WP53960 BUD23YCR047C 828 nt13.91□□□□□ -0.18
YNL040WP53960 SPT5YML010W 3192 nt13.89□□□□□ -0.19
YNL040WP53960 YJR120WYJR120W 351 nt13.84□□□□□ -0.19
YNL040WP53960 NAB2YGL122C 1578 nt13.79□□□□□ -0.2
YNL040WP53960 SRB2YHR041C 633 nt13.75□□□□□ -0.21
YNL040WP53960 RPP2BYDR382W 333 nt13.74□□□□□ -0.21
YNL040WP53960 SHU1YHL006C 453 nt13.69□□□□□ -0.22
YNL040WP53960 SSA4YER103W 1929 nt13.62□□□□□ -0.23
YNL040WP53960 YKL097CYKL097C 411 nt13.62□□□□□ -0.23
YNL040WP53960 FIS1YIL065C 468 nt13.6□□□□□ -0.23
YNL040WP53960 DAL1YIR027C 1383 nt13.59□□□□□ -0.23
YNL040WP53960 INM2YDR287W 879 nt13.57□□□□□ -0.24
YNL040WP53960 FPR4YLR449W 1179 nt13.56□□□□□ -0.24
YNL040WP53960 WWM1YFL010C 636 nt13.51□□□□□ -0.25
YNL040WP53960 YAL037C-BYAL037C-B 975 nt13.5□□□□□ -0.25
YNL040WP53960 PHO4YFR034C 939 nt13.47□□□□□ -0.25
YNL040WP53960 BDH2YAL061W 1254 nt13.46□□□□□ -0.25
YNL040WP53960 YBL100CYBL100C 315 nt13.42□□□□□ -0.26
YNL040WP53960 YGR021WYGR021W 873 nt13.39□□□□□ -0.27
YNL040WP53960 HOM6YJR139C 1080 nt13.36□□□□□ -0.27
YNL040WP53960 MEP2YNL142W 1500 nt13.29□□□□□ -0.28
YNL040WP53960 YFL021C-AYFL021C-A 855 nt13.28□□□□□ -0.28
YNL040WP53960 FUN26YAL022C 1554 nt13.28□□□□□ -0.28
YNL040WP53960 MNP1YGL068W 585 nt13.27□□□□□ -0.29
YNL040WP53960 LSM3YLR438C-A 270 nt13.27□□□□□ -0.29
YNL040WP53960 YPS1YLR120C 1710 nt13.24□□□□□ -0.29
YNL040WP53960 TRM9YML014W 840 nt13.22□□□□□ -0.29
YNL040WP53960 BDF1YLR399C 2061 nt13.16□□□□□ -0.3
YNL040WP53960 YDR095CYDR095C 411 nt13.15□□□□□ -0.3
YNL040WP53960 RKM5YLR137W 1104 nt13.15□□□□□ -0.3
YNL040WP53960 DCW1YKL046C 1350 nt13.14□□□□□ -0.31
YNL040WP53960 YOR139CYOR139C 393 nt13.11□□□□□ -0.31
YNL040WP53960 CCT6YDR188W 1641 nt13.1□□□□□ -0.31
YNL040WP53960 YHR165W-AYHR165W-A 312 nt13.09□□□□□ -0.31
YNL040WP53960 ALF1YNL148C 765 nt13.09□□□□□ -0.31
YNL040WP53960 NPL3YDR432W 1245 nt13.01□□□□□ -0.33
YNL040WP53960 YOL037CYOL037C 354 nt13□□□□□ -0.33
YNL040WP53960 SUF2tP(AGG)C 72 nt12.97□□□□□ -0.33
YNL040WP53960 SUF10tP(AGG)N 72 nt12.97□□□□□ -0.33
YNL040WP53960 TAT1YBR069C 1860 nt12.96□□□□□ -0.33
YNL040WP53960 SIS1YNL007C 1059 nt12.91□□□□□ -0.34
YNL040WP53960 RPP2AYOL039W 321 nt12.9□□□□□ -0.34
YNL040WP53960 EMI2YDR516C 1503 nt12.89□□□□□ -0.35
YNL040WP53960 PTP1YDL230W 1008 nt12.87□□□□□ -0.35
Retrieved 100 of 7,029 protein–RNA pairs in 14.5 ms