RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W SIP2P34164 415 aaKnown RBP3.1□□□□□ -1.91
UPF3YGR072W SOR1P35497 357 aaKnown RBP3.1□□□□□ -1.91
UPF3YGR072W PCF11P39081 626 aaPredicted RBP3.1□□□□□ -1.91
UPF3YGR072W VPS52P39904 641 aa3.1□□□□□ -1.91
UPF3YGR072W TRS85P46944 698 aa3.1□□□□□ -1.91
UPF3YGR072W IKS1P47042 667 aa3.1□□□□□ -1.91
UPF3YGR072W BRO1P48582 844 aa3.1□□□□□ -1.91
UPF3YGR072W YIP1P53039 248 aa3.1□□□□□ -1.91
UPF3YGR072W TAF12Q03761 539 aa3.1□□□□□ -1.91
UPF3YGR072W SOR2Q07786 357 aa3.1□□□□□ -1.91
UPF3YGR072W SGT1Q08446 395 aa3.1□□□□□ -1.91
UPF3YGR072W PGC1Q08959 321 aa3.1□□□□□ -1.91
UPF3YGR072W STF1P01098 86 aa3.09□□□□□ -1.91
UPF3YGR072W ARG4P04076 463 aaPredicted RBP3.09□□□□□ -1.91
UPF3YGR072W ARO3P14843 370 aaKnown RBP3.09□□□□□ -1.91
UPF3YGR072W MTF1P14908 341 aaKnown RBP3.09□□□□□ -1.91
UPF3YGR072W VMA2P16140 517 aaKnown RBP3.09□□□□□ -1.91
UPF3YGR072W TPM1P17536 199 aaKnown RBP3.09□□□□□ -1.91
UPF3YGR072W SMI1P32566 505 aa3.09□□□□□ -1.91
UPF3YGR072W PTR2P32901 601 aa3.09□□□□□ -1.91
UPF3YGR072W MRPL4P36517 319 aa3.09□□□□□ -1.91
UPF3YGR072W PFF1P38244 976 aa3.09□□□□□ -1.91
UPF3YGR072W LYS1P38998 373 aaRIP-Chip data3.09□□□□□ -1.91not detected
UPF3YGR072W PHO86P46956 311 aa3.09□□□□□ -1.91
UPF3YGR072W HMS2P47175 358 aa3.09□□□□□ -1.91
UPF3YGR072W SSN8P47821 323 aa3.09□□□□□ -1.91
UPF3YGR072W IMP4P53941 290 aaKnown RBP3.09□□□□□ -1.91
UPF3YGR072W ODC1Q03028 310 aa3.09□□□□□ -1.91
UPF3YGR072W YDR541CQ03049 344 aa3.09□□□□□ -1.91
UPF3YGR072W YMR087WQ04299 284 aa3.09□□□□□ -1.91
UPF3YGR072W SMA2Q04658 369 aa3.09□□□□□ -1.91
UPF3YGR072W YDR341CQ05506 607 aaKnown RBP3.09□□□□□ -1.91
UPF3YGR072W YDR286CQ05530 114 aa3.09□□□□□ -1.91
UPF3YGR072W YFH1Q07540 174 aa3.09□□□□□ -1.91
UPF3YGR072W CUE5Q08412 411 aaKnown RBP3.09□□□□□ -1.91
UPF3YGR072W RKM5Q12367 367 aa3.09□□□□□ -1.91
UPF3YGR072W TFB5Q3E7C1 72 aaPredicted RBP3.09□□□□□ -1.91
UPF3YGR072W SRN2Q99176 213 aa3.09□□□□□ -1.91
UPF3YGR072W ALG1P16661 449 aa3.08□□□□□ -1.92
UPF3YGR072W TRX1P22217 103 aaKnown RBP3.08□□□□□ -1.92
UPF3YGR072W PHO91P27514 894 aa3.08□□□□□ -1.92
UPF3YGR072W SEC1P30619 724 aaKnown RBP3.08□□□□□ -1.92
UPF3YGR072W NDI1P32340 513 aa3.08□□□□□ -1.92
UPF3YGR072W CYS4P32582 507 aaKnown RBP3.08□□□□□ -1.92
UPF3YGR072W YCR041WP37265 110 aa3.08□□□□□ -1.92
UPF3YGR072W YBL028CP38202 106 aa3.08□□□□□ -1.92
UPF3YGR072W KAP104P38217 918 aaKnown RBP3.08□□□□□ -1.92
UPF3YGR072W SLX1P38324 304 aa3.08□□□□□ -1.92
UPF3YGR072W SHO1P40073 367 aa3.08□□□□□ -1.92
UPF3YGR072W GAT2P40209 560 aa3.08□□□□□ -1.92
UPF3YGR072W GWT1P47026 490 aa3.08□□□□□ -1.92
UPF3YGR072W TOF1P53840 1238 aa3.08□□□□□ -1.92
UPF3YGR072W CRZ1P53968 678 aa3.08□□□□□ -1.92
UPF3YGR072W RLI1Q03195 608 aaKnown RBP3.08□□□□□ -1.92
UPF3YGR072W NDL1Q06568 189 aa3.08□□□□□ -1.92
UPF3YGR072W NSE1Q07913 336 aa3.08□□□□□ -1.92
UPF3YGR072W CDC21P06785 304 aa3.07□□□□□ -1.92
UPF3YGR072W PRP16P15938 1071 aaPredicted RBP3.07□□□□□ -1.92
UPF3YGR072W RAD57P25301 460 aa3.07□□□□□ -1.92
UPF3YGR072W NIP1P32497 812 aaKnown RBP3.07□□□□□ -1.92
UPF3YGR072W NDC1P32500 655 aa3.07□□□□□ -1.92
UPF3YGR072W UIP5P36137 443 aa3.07□□□□□ -1.92
UPF3YGR072W PCA1P38360 1216 aa3.07□□□□□ -1.92
UPF3YGR072W POP2P39008 433 aa3.07□□□□□ -1.92
UPF3YGR072W YAL037WP39728 267 aa3.07□□□□□ -1.92
UPF3YGR072W ALG8P40351 577 aa3.07□□□□□ -1.92
UPF3YGR072W ASN2P49090 572 aaKnown RBP3.07□□□□□ -1.92
UPF3YGR072W KTR5P53966 522 aaPredicted RBP3.07□□□□□ -1.92
UPF3YGR072W RPM2Q02773 1202 aa3.07□□□□□ -1.92
UPF3YGR072W RSN1Q03516 953 aa3.07□□□□□ -1.92
UPF3YGR072W BET5Q03630 159 aa3.07□□□□□ -1.92
UPF3YGR072W NBL1Q3E7Y6 73 aa3.07□□□□□ -1.92
UPF3YGR072W LSB5P25369 354 aa3.06□□□□□ -1.92
UPF3YGR072W TOA1P32773 286 aa3.06□□□□□ -1.92
UPF3YGR072W RPS0AP32905 252 aaKnown RBP3.06□□□□□ -1.92
UPF3YGR072W YSW1P38280 609 aa3.06□□□□□ -1.92
UPF3YGR072W INM1P38710 295 aa3.06□□□□□ -1.92
UPF3YGR072W RRP4P38792 359 aaKnown RBP3.06□□□□□ -1.92
UPF3YGR072W MLH1P38920 769 aa3.06□□□□□ -1.92
UPF3YGR072W STN1P38960 494 aa3.06□□□□□ -1.92
UPF3YGR072W YPS6P40583 537 aa3.06□□□□□ -1.92
UPF3YGR072W PAC11P40960 533 aa3.06□□□□□ -1.92
UPF3YGR072W FRE4P53746 719 aa3.06□□□□□ -1.92
UPF3YGR072W MEH1Q02205 184 aa3.06□□□□□ -1.92
UPF3YGR072W MRP51Q02950 344 aa3.06□□□□□ -1.92
UPF3YGR072W MMT1Q03218 510 aa3.06□□□□□ -1.92
UPF3YGR072W SKI7Q08491 747 aaPredicted RBP3.06□□□□□ -1.92
UPF3YGR072W TIM18Q08749 192 aa3.06□□□□□ -1.92
UPF3YGR072W PKH2Q12236 1081 aaKnown RBP3.06□□□□□ -1.92
UPF3YGR072W ATG34Q12292 412 aa3.06□□□□□ -1.92
UPF3YGR072W COX3P00420 269 aa3.05□□□□□ -1.92
UPF3YGR072W TEF1P02994 458 aaKnown RBP3.05□□□□□ -1.92
UPF3YGR072W DST1P07273 309 aa3.05□□□□□ -1.92
UPF3YGR072W ATR1P13090 542 aa3.05□□□□□ -1.92
UPF3YGR072W SPO12P17123 173 aa3.05□□□□□ -1.92
UPF3YGR072W CTR86P25355 563 aa3.05□□□□□ -1.92
UPF3YGR072W TIP1P27654 210 aaPredicted RBP3.05□□□□□ -1.92
UPF3YGR072W POT1P27796 417 aaKnown RBP RIP-Chip data3.05□□□□□ -1.92not detected
UPF3YGR072W SPC110P32380 944 aa3.05□□□□□ -1.92
UPF3YGR072W GLC7P32598 312 aaKnown RBP3.05□□□□□ -1.92
Retrieved 100 of 5,963 RNA–protein pairs in 10.5 ms