Protein–RNA interactions for Protein: P38998

LYS1, Saccharopine dehydrogenase [NAD(+), L-lysine-forming], yeastyeast

RIP-Chip data

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LYS1P38998 YML009W-BYML009W-B 477 nt19.75■□□□□ 0.75
LYS1P38998 NSR1YGR159C 1245 nt19.5■□□□□ 0.71
LYS1P38998 NOP1YDL014W 984 nt19.32■□□□□ 0.68
LYS1P38998 YKL036CYKL036C 393 nt17.99■□□□□ 0.47
LYS1P38998 MDJ1YFL016C 1536 nt17.09■□□□□ 0.33
LYS1P38998 Q0297Q0297 156 nt16.97■□□□□ 0.31
LYS1P38998 SRX1YKL086W 384 nt16.88■□□□□ 0.29
LYS1P38998 YJL027CYJL027C 417 nt16.82■□□□□ 0.28
LYS1P38998 SCS3YGL126W 1143 nt16.46■□□□□ 0.23 RIP-Chip
LYS1P38998 YCR051WYCR051W 669 nt16■□□□□ 0.15 RIP-Chip
LYS1P38998 YOL085CYOL085C 342 nt15.58■□□□□ 0.08
LYS1P38998 PKP1YIL042C 1185 nt15.29■□□□□ 0.04 RIP-Chip
LYS1P38998 DBP2YNL112W 1641 nt15.22■□□□□ 0.03
LYS1P38998 RPP1BYDL130W 321 nt15.22■□□□□ 0.03
LYS1P38998 TRN1tP(UGG)A 72 nt15.14■□□□□ 0.01
LYS1P38998 SUF9tP(UGG)F 72 nt15.14■□□□□ 0.01
LYS1P38998 SUF8tP(UGG)H 72 nt15.14■□□□□ 0.01
LYS1P38998 tP(UGG)LtP(UGG)L 72 nt15.14■□□□□ 0.01
LYS1P38998 SUF7tP(UGG)M 72 nt15.14■□□□□ 0.01
LYS1P38998 tP(UGG)N1tP(UGG)N1 72 nt15.14■□□□□ 0.01
LYS1P38998 tP(UGG)N2tP(UGG)N2 72 nt15.14■□□□□ 0.01
LYS1P38998 tP(UGG)O1tP(UGG)O1 72 nt15.14■□□□□ 0.01
LYS1P38998 SUF11tP(UGG)O2 72 nt15.14■□□□□ 0.01
LYS1P38998 CCC1YLR220W 969 nt14.96□□□□□ -0.01
LYS1P38998 SCJ1YMR214W 1134 nt14.86□□□□□ -0.03
LYS1P38998 ATS1YAL020C 1002 nt14.79□□□□□ -0.04 RIP-Chip
LYS1P38998 YBR190WYBR190W 312 nt14.56□□□□□ -0.08
LYS1P38998 PET122YER153C 765 nt14.5□□□□□ -0.09
LYS1P38998 SCR1SCR1 522 nt14.42□□□□□ -0.1
LYS1P38998 tP(UGG)O3tP(UGG)O3 72 nt14.38□□□□□ -0.11
LYS1P38998 RVS167YDR388W 1449 nt14.37□□□□□ -0.11 RIP-Chip
LYS1P38998 RTC3YHR087W 336 nt14.22□□□□□ -0.13
LYS1P38998 RRN5YLR141W 1092 nt14.11□□□□□ -0.15 RIP-Chip
LYS1P38998 YDJ1YNL064C 1230 nt13.93□□□□□ -0.18
LYS1P38998 SHR5YOL110W 714 nt13.91□□□□□ -0.18 RIP-Chip
LYS1P38998 RSB1YOR049C 1065 nt13.87□□□□□ -0.19 RIP-Chip
LYS1P38998 YER088W-BYER088W-B 147 nt13.85□□□□□ -0.19
LYS1P38998 PST2YDR032C 597 nt13.67□□□□□ -0.22
LYS1P38998 GAR1YHR089C 618 nt13.56□□□□□ -0.24
LYS1P38998 DEP1YAL013W 1218 nt13.42□□□□□ -0.26 RIP-Chip
LYS1P38998 URN1YPR152C 1398 nt13.39□□□□□ -0.27 RIP-Chip
LYS1P38998 YNL208WYNL208W 600 nt13.27□□□□□ -0.29
LYS1P38998 RPN10YHR200W 807 nt13.25□□□□□ -0.29
LYS1P38998 YKL097CYKL097C 411 nt13.22□□□□□ -0.29
LYS1P38998 OPI9YLR338W 858 nt13.17□□□□□ -0.3
LYS1P38998 TIR1YER011W 765 nt13.11□□□□□ -0.31 RIP-Chip
LYS1P38998 PUT4YOR348C 1884 nt13.06□□□□□ -0.32 RIP-Chip
LYS1P38998 SHU1YHL006C 453 nt13.05□□□□□ -0.32 RIP-Chip
LYS1P38998 SAH1YER043C 1350 nt13.02□□□□□ -0.33
LYS1P38998 SSA1YAL005C 1929 nt12.91□□□□□ -0.34
LYS1P38998 ARE1YCR048W 1833 nt12.89□□□□□ -0.35 RIP-Chip
LYS1P38998 YJR018WYJR018W 363 nt12.79□□□□□ -0.36
LYS1P38998 PUN1YLR414C 792 nt12.79□□□□□ -0.36
LYS1P38998 YAL037C-BYAL037C-B 975 nt12.77□□□□□ -0.37
LYS1P38998 SRB2YHR041C 633 nt12.71□□□□□ -0.37 RIP-Chip
LYS1P38998 YHR049C-AYHR049C-A 297 nt12.7□□□□□ -0.38
LYS1P38998 YOR139CYOR139C 393 nt12.65□□□□□ -0.38
LYS1P38998 POA1YBR022W 534 nt12.65□□□□□ -0.38
LYS1P38998 YJR120WYJR120W 351 nt12.63□□□□□ -0.39
LYS1P38998 PTC2YER089C 1395 nt12.59□□□□□ -0.39 RIP-Chip
LYS1P38998 RPP2BYDR382W 333 nt12.59□□□□□ -0.39
LYS1P38998 YGR021WYGR021W 873 nt12.56□□□□□ -0.4 RIP-Chip
LYS1P38998 WWM1YFL010C 636 nt12.55□□□□□ -0.4 RIP-Chip
LYS1P38998 HOM6YJR139C 1080 nt12.52□□□□□ -0.41
LYS1P38998 NPL3YDR432W 1245 nt12.5□□□□□ -0.41
LYS1P38998 MNP1YGL068W 585 nt12.46□□□□□ -0.41
LYS1P38998 BUD23YCR047C 828 nt12.41□□□□□ -0.42 RIP-Chip
LYS1P38998 NAB2YGL122C 1578 nt12.41□□□□□ -0.42 RIP-Chip
LYS1P38998 BDH2YAL061W 1254 nt12.38□□□□□ -0.43 RIP-Chip
LYS1P38998 YFL021C-AYFL021C-A 855 nt12.37□□□□□ -0.43
LYS1P38998 YOL037CYOL037C 354 nt12.37□□□□□ -0.43
LYS1P38998 SSA3YBL075C 1950 nt12.37□□□□□ -0.43 RIP-Chip
LYS1P38998 BSC6YOL137W 1494 nt12.34□□□□□ -0.43 RIP-Chip
LYS1P38998 RKM5YLR137W 1104 nt12.34□□□□□ -0.43 RIP-Chip
LYS1P38998 INM2YDR287W 879 nt12.33□□□□□ -0.44
LYS1P38998 DAL1YIR027C 1383 nt12.29□□□□□ -0.44
LYS1P38998 LSM3YLR438C-A 270 nt12.27□□□□□ -0.45
LYS1P38998 FIS1YIL065C 468 nt12.24□□□□□ -0.45
LYS1P38998 FPR4YLR449W 1179 nt12.23□□□□□ -0.45
LYS1P38998 YBL100CYBL100C 315 nt12.22□□□□□ -0.45
LYS1P38998 tM(CAU)CtM(CAU)C 72 nt12.16□□□□□ -0.46
LYS1P38998 IMT4tM(CAU)E 72 nt12.16□□□□□ -0.46
LYS1P38998 IMT3tM(CAU)J3 72 nt12.16□□□□□ -0.46
LYS1P38998 IMT1tM(CAU)O1 72 nt12.16□□□□□ -0.46
LYS1P38998 IMT2tM(CAU)P 72 nt12.16□□□□□ -0.46
LYS1P38998 PHO4YFR034C 939 nt12.15□□□□□ -0.46 RIP-Chip
LYS1P38998 TRM9YML014W 840 nt12.11□□□□□ -0.47 RIP-Chip
LYS1P38998 FUN26YAL022C 1554 nt12.09□□□□□ -0.47 RIP-Chip
LYS1P38998 YLR281CYLR281C 468 nt12.06□□□□□ -0.48 RIP-Chip
LYS1P38998 PUS2YGL063W 1113 nt11.99□□□□□ -0.49 RIP-Chip
LYS1P38998 CCT6YDR188W 1641 nt11.99□□□□□ -0.49
LYS1P38998 WHI5YOR083W 888 nt11.98□□□□□ -0.49 RIP-Chip
LYS1P38998 SUF2tP(AGG)C 72 nt11.87□□□□□ -0.51 RIP-Chip
LYS1P38998 SUF10tP(AGG)N 72 nt11.87□□□□□ -0.51
LYS1P38998 ALF1YNL148C 765 nt11.87□□□□□ -0.51 RIP-Chip
LYS1P38998 YPS1YLR120C 1710 nt11.86□□□□□ -0.51 RIP-Chip
LYS1P38998 YLR154C-GYLR154C-G 150 nt11.83□□□□□ -0.52
LYS1P38998 YDR095CYDR095C 411 nt11.82□□□□□ -0.52
LYS1P38998 DSK2YMR276W 1122 nt11.76□□□□□ -0.53
LYS1P38998 IMP2'YIL154C 1041 nt11.75□□□□□ -0.53 RIP-Chip
Retrieved 100 of 7,029 protein–RNA pairs in 14.3 ms