RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	VTC2	P43585	828 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	IRC8	P47046	822 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	KAP114	P53067	1004 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	TOF1	P53840	1238 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	RPL22B	P56628	122 aa	Known RBP	4.27	□□□□□ -1.73
HSP42	YDR171W	MRPL13	Q02204	264 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	SEG1	Q04279	960 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	GTB1	Q04924	702 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	YDR341C	Q05506	607 aa	Known RBP	4.27	□□□□□ -1.73
HSP42	YDR171W	TFC6	Q06339	672 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	VIP1	Q06685	1146 aa	Known RBP	4.27	□□□□□ -1.73
HSP42	YDR171W	MLH2	Q07980	695 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	RRI2	Q12348	645 aa		4.27	□□□□□ -1.73
HSP42	YDR171W	POM152	P39685	1337 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	FOB1	O13329	566 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	RPC53	P25441	422 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	PWP2	P25635	923 aa	Known RBP	4.26	□□□□□ -1.73
HSP42	YDR171W	MRE11	P32829	692 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	YBL055C	P34220	418 aa	Predicted RBP	4.26	□□□□□ -1.73
HSP42	YDR171W	RPC25	P35718	212 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	YPT53	P36019	220 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	IMD2	P38697	523 aa	Known RBP	4.26	□□□□□ -1.73
HSP42	YDR171W	XBP1	P40489	647 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	PCI8	P40512	444 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	LYS14	P40971	790 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	YRB1	P41920	201 aa	Known RBP	4.26	□□□□□ -1.73
HSP42	YDR171W	BPL1	P48445	690 aa	Predicted RBP	4.26	□□□□□ -1.73
HSP42	YDR171W	IMD3	P50095	523 aa	Known RBP	4.26	□□□□□ -1.73
HSP42	YDR171W	VID30	P53076	958 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	YGR021W	P53212	290 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	IST1	P53843	298 aa	Predicted RBP	4.26	□□□□□ -1.73
HSP42	YDR171W	DSL1	P53847	754 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	KRE28	Q04431	385 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	TPO3	Q06451	622 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	RAD34	Q06665	692 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	SIL1	Q08199	421 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	VIK1	Q12045	647 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	MSH5	Q12175	901 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	PRS5	Q12265	496 aa	Known RBP	4.26	□□□□□ -1.73
HSP42	YDR171W	COX17	Q12287	69 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	PCD1	Q12524	340 aa		4.26	□□□□□ -1.73
HSP42	YDR171W	RIF1	P29539	1916 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	ILV2	P07342	687 aa	Known RBP	4.25	□□□□□ -1.73
HSP42	YDR171W	SUI3	P09064	285 aa	Known RBP	4.25	□□□□□ -1.73
HSP42	YDR171W	URE2	P23202	354 aa	Known RBP	4.25	□□□□□ -1.73
HSP42	YDR171W	RPN2	P32565	945 aa	Known RBP	4.25	□□□□□ -1.73
HSP42	YDR171W	BEM3	P32873	1128 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	RPC37	P36121	282 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	MRPL36	P36531	177 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	FTH1	P38310	465 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	HSM3	P38348	480 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	PET100	P38958	111 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	ALG5	P40350	334 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	JEM1	P40358	645 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	SMK1	P41808	388 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	UBX6	P47049	396 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	YGL138C	P53122	345 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	COS6	P53344	381 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	YNL040W	P53960	456 aa	Predicted RBP	4.25	□□□□□ -1.73
HSP42	YDR171W	YKR005C	Q02203	525 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	SHR3	Q02774	210 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	MTG1	Q03151	367 aa	Predicted RBP	4.25	□□□□□ -1.73
HSP42	YDR171W	ARR1	Q06596	294 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	IRC3	Q06683	689 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	YPR078C	Q06813	372 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
HSP42	YDR171W	YPL191C	Q08930	360 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	HIF1	Q12373	385 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	RTP1	Q12751	981 aa		4.25	□□□□□ -1.73
HSP42	YDR171W	ATP2	P00830	511 aa	Known RBP	4.24	□□□□□ -1.73
HSP42	YDR171W	COQ1	P18900	473 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	RFA2	P26754	273 aa	Known RBP	4.24	□□□□□ -1.73
HSP42	YDR171W	RPC19	P28000	142 aa	Known RBP	4.24	□□□□□ -1.73
HSP42	YDR171W	LAC1	P28496	418 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	NPL6	P32832	435 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	YKR015C	P36111	568 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	JNM1	P36224	373 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	FES1	P38260	290 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	ERG7	P38604	731 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	MMS21	P38632	267 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	UBP7	P40453	1071 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	RBL2	P48606	106 aa	Known RBP	4.24	□□□□□ -1.73
HSP42	YDR171W	HOP2	P53187	214 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	ORM1	P53224	222 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	YAT1	P80235	687 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	MDM1	Q01846	1127 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	FCP1	Q03254	732 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	SNU56	Q03782	492 aa	Known RBP	4.24	□□□□□ -1.73
HSP42	YDR171W	YDR109C	Q04585	715 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	YOL075C	Q08234	1294 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	SGT2	Q12118	346 aa	Known RBP	4.24	□□□□□ -1.73
HSP42	YDR171W	BUG1	Q12191	341 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	NFI1	Q12216	726 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	RUP1	Q12242	671 aa		4.24	□□□□□ -1.73
HSP42	YDR171W	TPK1	P06244	397 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	PEP5	P12868	1029 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	THR4	P16120	514 aa	Known RBP	4.23	□□□□□ -1.73
HSP42	YDR171W	URA4	P20051	364 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	MAK31	P23059	88 aa		4.23	□□□□□ -1.73
HSP42	YDR171W	MAK32	P23060	363 aa		4.23	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 49.2 ms