RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	YLR413W	Q06689	675 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	WHI4	Q07655	649 aa	Known RBP	5.46	□□□□□ -1.54
NUP1	YOR098C	YRM1	Q12340	786 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	TDH1	P00360	332 aa	Known RBP	5.46	□□□□□ -1.54
NUP1	YOR098C	RNR1	P21524	888 aa	Known RBP	5.46	□□□□□ -1.54
NUP1	YOR098C	CAD1	P24813	409 aa	Known RBP	5.46	□□□□□ -1.54
NUP1	YOR098C	APL1	P27351	700 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	NTH1	P32356	751 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	DPH5	P32469	300 aa	Predicted RBP	5.46	□□□□□ -1.54
NUP1	YOR098C	SEC66	P33754	206 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	TCD2	P36101	447 aa	Known RBP	5.46	□□□□□ -1.54
NUP1	YOR098C	RFC5	P38251	354 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	MMS4	P38257	691 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	PEX18	P38855	283 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	ASI2	P53895	289 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	VPS60	Q03390	229 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	MSC2	Q03455	724 aa		5.46	□□□□□ -1.54
NUP1	YOR098C	PDC5	P16467	563 aa	Known RBP	5.45	□□□□□ -1.54
NUP1	YOR098C	YME1	P32795	747 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	YBL055C	P34220	418 aa	Predicted RBP	5.45	□□□□□ -1.54
NUP1	YOR098C	ALG14	P38242	237 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	NTC20	P38302	140 aa	Predicted RBP	5.45	□□□□□ -1.54
NUP1	YOR098C	ALD5	P40047	520 aa	Known RBP	5.45	□□□□□ -1.54
NUP1	YOR098C	MTG1	Q03151	367 aa	Predicted RBP	5.45	□□□□□ -1.54
NUP1	YOR098C	HOF1	Q05080	669 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	YDR061W	Q12298	539 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	SEC7	P11075	2009 aa	Known RBP	5.45	□□□□□ -1.54
NUP1	YOR098C	HIP1	P06775	603 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	DEP1	P31385	405 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	MRE11	P32829	692 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	PIM1	P36775	1133 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	AFG3	P39925	761 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	AIM10	P39965	576 aa	Known RBP	5.45	□□□□□ -1.54
NUP1	YOR098C	EFM3	P47163	339 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	RLM1	Q12224	676 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	POM34	Q12445	299 aa		5.45	□□□□□ -1.54
NUP1	YOR098C	RAD50	P12753	1312 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	PFF1	P38244	976 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	SEC31	P38968	1273 aa	Known RBP	5.44	□□□□□ -1.54
NUP1	YOR098C	ASG1	P40467	964 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	YGL242C	P53066	181 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	BUD22	Q04347	519 aa	Known RBP	5.44	□□□□□ -1.54
NUP1	YOR098C	GPN2	Q08726	347 aa	Predicted RBP	5.44	□□□□□ -1.54
NUP1	YOR098C	RAD9	P14737	1309 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	YBR085C-A	O43137	85 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	CBP2	P03874	630 aa	Predicted RBP	5.44	□□□□□ -1.54
NUP1	YOR098C	YML003W	P0CF16	290 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	UNG1	P12887	359 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	PRP2	P20095	876 aa	Predicted RBP	5.44	□□□□□ -1.54
NUP1	YOR098C	KIN82	P25341	720 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	DOA4	P32571	926 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	SRB5	P32585	307 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	MNN2	P38069	597 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	IMD4	P50094	524 aa	Known RBP	5.44	□□□□□ -1.54
NUP1	YOR098C	CRF1	Q04930	467 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	VTA1	Q06263	330 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	OPT2	Q06593	877 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	MDM36	Q06820	579 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	SYT1	Q06836	1226 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	SMY1	P32364	656 aa	Known RBP	5.44	□□□□□ -1.54
NUP1	YOR098C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	5.44	□□□□□ -1.54	not detected
NUP1	YOR098C	RFC3	P38629	340 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	SIC1	P38634	284 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	MLH1	P38920	769 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	IDS2	P46958	469 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	VID30	P53076	958 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	GSH2	Q08220	491 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	YVC1	Q12324	675 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	YIL002W-A	Q3E7Z5	69 aa		5.44	□□□□□ -1.54
NUP1	YOR098C	SEC12	P11655	471 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	GIP4	P39732	760 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	ALG5	P40350	334 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	LIA1	P47120	325 aa	Known RBP	5.43	□□□□□ -1.54
NUP1	YOR098C	YNL050C	P53952	270 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	CUR1	Q06469	252 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	PRS5	Q12265	496 aa	Known RBP	5.43	□□□□□ -1.54
NUP1	YOR098C	RPB4	P20433	221 aa	Predicted RBP	5.43	□□□□□ -1.54
NUP1	YOR098C	FAA1	P30624	700 aa	Known RBP	5.43	□□□□□ -1.54
NUP1	YOR098C	MRPL4	P36517	319 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	MRPL10	P36520	322 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	RRM3	P38766	723 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	MSS4	P38994	779 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	YFR018C	P43599	363 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	ECM27	P47144	725 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	STR3	P53101	465 aa	Known RBP	5.43	□□□□□ -1.54
NUP1	YOR098C	RPN9	Q04062	393 aa	Known RBP	5.43	□□□□□ -1.54
NUP1	YOR098C	HRP1	Q99383	534 aa	Known RBP	5.43	□□□□□ -1.54
NUP1	YOR098C	USO1	P25386	1790 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	SIR4	P11978	1358 aa		5.43	□□□□□ -1.54
NUP1	YOR098C	YLR278C	Q05854	1341 aa		5.42	□□□□□ -1.54
NUP1	YOR098C	UBA1	P22515	1024 aa	Known RBP	5.42	□□□□□ -1.54
NUP1	YOR098C	DCG1	P32460	244 aa		5.42	□□□□□ -1.54
NUP1	YOR098C	TPO5	P36029	618 aa		5.42	□□□□□ -1.54
NUP1	YOR098C	GDT1	P38301	280 aa	Predicted RBP	5.42	□□□□□ -1.54
NUP1	YOR098C	LIN1	P38852	340 aa	Predicted RBP	5.42	□□□□□ -1.54
NUP1	YOR098C	GET2	P40056	285 aa		5.42	□□□□□ -1.54
NUP1	YOR098C	SIZ1	Q04195	904 aa		5.42	□□□□□ -1.54
NUP1	YOR098C	RAD61	Q99359	647 aa		5.42	□□□□□ -1.54
NUP1	YOR098C	VPS63	O13549	108 aa		5.42	□□□□□ -1.54
NUP1	YOR098C	RME1	P32338	300 aa	Known RBP	5.42	□□□□□ -1.54

Retrieved 100 of 5,963 RNA–protein pairs in 49 ms