RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	DRS1	P32892	752 aa	Known RBP	11.85	□□□□□ -0.51
NUP1	YOR098C	TFA1	P36100	482 aa		10.96	□□□□□ -0.66
NUP1	YOR098C	BFR2	Q06631	534 aa	Known RBP	10.77	□□□□□ -0.69
NUP1	YOR098C	MTC1	P47018	478 aa	Known RBP	10.58	□□□□□ -0.72
NUP1	YOR098C	RQC2	Q12532	1038 aa	Known RBP	10.41	□□□□□ -0.74
NUP1	YOR098C	TAF7	Q05021	590 aa		10.06	□□□□□ -0.8
NUP1	YOR098C	AVT3	P36062	692 aa		9.9	□□□□□ -0.83
NUP1	YOR098C	DIP2	Q12220	943 aa	Predicted RBP	9.67	□□□□□ -0.86
NUP1	YOR098C	DMA1	P38823	416 aa		9.52	□□□□□ -0.88
NUP1	YOR098C	LEO1	P38439	464 aa		9.25	□□□□□ -0.93
NUP1	YOR098C	PTP3	P40048	928 aa		8.84	□□□□□ -0.99
NUP1	YOR098C	RSE1	Q04693	1361 aa	Known RBP	8.76	□□□□□ -1.01
NUP1	YOR098C	LEU3	P08638	886 aa		8.75	□□□□□ -1.01
NUP1	YOR098C	SAS10	Q12136	610 aa	Predicted RBP	8.59	□□□□□ -1.03
NUP1	YOR098C	DMA2	P53924	522 aa		8.59	□□□□□ -1.03
NUP1	YOR098C	ABP1	P15891	592 aa	Known RBP	8.52	□□□□□ -1.05
NUP1	YOR098C	SSP1	P38871	571 aa		8.48	□□□□□ -1.05
NUP1	YOR098C	RPL17A	P05740	184 aa	Known RBP	8.39	□□□□□ -1.07
NUP1	YOR098C	RPL17B	P46990	184 aa	Known RBP	8.39	□□□□□ -1.07
NUP1	YOR098C	RPN1	P38764	993 aa	Known RBP	8.38	□□□□□ -1.07
NUP1	YOR098C	RLF2	Q12495	606 aa		8.37	□□□□□ -1.07
NUP1	YOR098C	IFH1	P39520	1085 aa		8.35	□□□□□ -1.07
NUP1	YOR098C	RIM101	P33400	625 aa		8.33	□□□□□ -1.08
NUP1	YOR098C	ISW2	Q08773	1120 aa		8.27	□□□□□ -1.08
NUP1	YOR098C	SPT21	P35209	758 aa		8.22	□□□□□ -1.09
NUP1	YOR098C	RPG1	P38249	964 aa	Known RBP	8.19	□□□□□ -1.1
NUP1	YOR098C	AIM44	Q99299	758 aa		8.18	□□□□□ -1.1
NUP1	YOR098C	NAP1	P25293	417 aa	Known RBP	8.18	□□□□□ -1.1
NUP1	YOR098C	YAH1	Q12184	172 aa	Known RBP	8.18	□□□□□ -1.1
NUP1	YOR098C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	8.17	□□□□□ -1.1	not detected
NUP1	YOR098C	CKB1	P43639	278 aa		8.17	□□□□□ -1.1
NUP1	YOR098C	IOC4	Q04213	475 aa		8.16	□□□□□ -1.1
NUP1	YOR098C	OXP1	P28273	1286 aa		8.16	□□□□□ -1.1
NUP1	YOR098C	REB1	P21538	810 aa		8.14	□□□□□ -1.11
NUP1	YOR098C	YLR271W	Q06152	274 aa		8.13	□□□□□ -1.11
NUP1	YOR098C	ORC1	P54784	914 aa	Predicted RBP	8.12	□□□□□ -1.11
NUP1	YOR098C	SPB4	P25808	606 aa	Predicted RBP	8.05	□□□□□ -1.12
NUP1	YOR098C	MGA2	P40578	1113 aa		8.05	□□□□□ -1.12
NUP1	YOR098C	YML020W	Q03722	664 aa		8.01	□□□□□ -1.13
NUP1	YOR098C	CST9	Q06032	482 aa		7.97	□□□□□ -1.13
NUP1	YOR098C	YIL055C	P40523	627 aa	Known RBP	7.94	□□□□□ -1.14
NUP1	YOR098C	NOP8	Q08287	484 aa	Predicted RBP	7.93	□□□□□ -1.14
NUP1	YOR098C	KIN1	P13185	1064 aa		7.93	□□□□□ -1.14
NUP1	YOR098C	VPS70	P47161	811 aa		7.93	□□□□□ -1.14
NUP1	YOR098C	YPR148C	Q06523	435 aa		7.9	□□□□□ -1.14
NUP1	YOR098C	SET1	P38827	1080 aa	Known RBP	7.87	□□□□□ -1.15
NUP1	YOR098C	DSF2	P38213	736 aa		7.84	□□□□□ -1.16
NUP1	YOR098C	SLX8	P40072	274 aa		7.84	□□□□□ -1.16
NUP1	YOR098C	RSM7	P47150	247 aa		7.84	□□□□□ -1.16
NUP1	YOR098C	YNR021W	P53723	404 aa	Known RBP	7.82	□□□□□ -1.16
NUP1	YOR098C	RAM2	P29703	316 aa		7.82	□□□□□ -1.16
NUP1	YOR098C	PRI1	P10363	409 aa		7.81	□□□□□ -1.16
NUP1	YOR098C	HGH1	P48362	394 aa	Known RBP	7.81	□□□□□ -1.16
NUP1	YOR098C	GLC3	P32775	704 aa		7.79	□□□□□ -1.16
NUP1	YOR098C	GEF1	P37020	779 aa		7.77	□□□□□ -1.17
NUP1	YOR098C	SSA1	P10591	642 aa	Known RBP	7.77	□□□□□ -1.17
NUP1	YOR098C	GUA1	P38625	525 aa	Known RBP	7.77	□□□□□ -1.17
NUP1	YOR098C	PSD2	P53037	1138 aa	Known RBP	7.77	□□□□□ -1.17
NUP1	YOR098C	PBS2	P08018	668 aa		7.75	□□□□□ -1.17
NUP1	YOR098C	AIM7	Q12156	149 aa		7.74	□□□□□ -1.17
NUP1	YOR098C	SUB2	Q07478	446 aa	Known RBP	7.73	□□□□□ -1.17
NUP1	YOR098C	MAM3	Q12296	706 aa		7.73	□□□□□ -1.17
NUP1	YOR098C	NOP7	P53261	605 aa	Known RBP	7.7	□□□□□ -1.18
NUP1	YOR098C	URN1	Q06525	465 aa	Known RBP	7.69	□□□□□ -1.18
NUP1	YOR098C	YKR023W	P36119	530 aa	Known RBP	7.68	□□□□□ -1.18
NUP1	YOR098C	MRX12	P47084	519 aa		7.68	□□□□□ -1.18
NUP1	YOR098C	DIT2	P21595	489 aa		7.65	□□□□□ -1.18
NUP1	YOR098C	IES2	P40154	320 aa		7.64	□□□□□ -1.19
NUP1	YOR098C	TFB3	Q03290	321 aa		7.64	□□□□□ -1.19
NUP1	YOR098C	AI2	P03876	854 aa		7.63	□□□□□ -1.19
NUP1	YOR098C	HPC2	Q01448	625 aa		7.63	□□□□□ -1.19
NUP1	YOR098C	NUP42	P49686	430 aa	Known RBP	7.63	□□□□□ -1.19
NUP1	YOR098C	RCR1	P38212	213 aa		7.61	□□□□□ -1.19
NUP1	YOR098C	SNU71	P53207	620 aa	Known RBP	7.59	□□□□□ -1.19
NUP1	YOR098C	TOP1	P04786	769 aa		7.57	□□□□□ -1.2
NUP1	YOR098C	PAM1	P37304	830 aa	Known RBP	7.57	□□□□□ -1.2
NUP1	YOR098C	PKC1	P24583	1151 aa		7.57	□□□□□ -1.2
NUP1	YOR098C	MAK21	Q12176	1025 aa	Known RBP	7.56	□□□□□ -1.2
NUP1	YOR098C	MET10	P39692	1035 aa		7.56	□□□□□ -1.2
NUP1	YOR098C	HO	P09932	586 aa		7.53	□□□□□ -1.2
NUP1	YOR098C	SLD2	P34252	453 aa		7.53	□□□□□ -1.2
NUP1	YOR098C	TSR3	Q12094	313 aa	Known RBP	7.53	□□□□□ -1.2
NUP1	YOR098C	GLN1	P32288	370 aa	Known RBP	7.52	□□□□□ -1.21
NUP1	YOR098C	BIM1	P40013	344 aa		7.52	□□□□□ -1.21
NUP1	YOR098C	ATF2	P53296	535 aa		7.52	□□□□□ -1.21
NUP1	YOR098C	MAK11	P20484	414 aa	Known RBP	7.52	□□□□□ -1.21
NUP1	YOR098C	BRL1	P38770	471 aa		7.52	□□□□□ -1.21
NUP1	YOR098C	RRN6	P32786	894 aa		7.51	□□□□□ -1.21
NUP1	YOR098C	SSA4	P22202	642 aa	Known RBP	7.51	□□□□□ -1.21
NUP1	YOR098C	TFC8	Q12308	588 aa		7.5	□□□□□ -1.21
NUP1	YOR098C	ATG32	P40458	529 aa		7.5	□□□□□ -1.21
NUP1	YOR098C	REF2	P42073	533 aa	Predicted RBP	7.49	□□□□□ -1.21
NUP1	YOR098C	AAD16	Q02895	342 aa		7.49	□□□□□ -1.21
NUP1	YOR098C	DCD1	P06773	312 aa		7.48	□□□□□ -1.21
NUP1	YOR098C	YTA7	P40340	1379 aa		7.48	□□□□□ -1.21
NUP1	YOR098C	MRM1	P25270	412 aa		7.48	□□□□□ -1.21
NUP1	YOR098C	YJL007C	P47080	104 aa		7.48	□□□□□ -1.21
NUP1	YOR098C	SEN54	Q02825	467 aa	Predicted RBP	7.47	□□□□□ -1.21
NUP1	YOR098C	BRN1	P38170	754 aa		7.46	□□□□□ -1.22
NUP1	YOR098C	SSF1	P38789	453 aa	Predicted RBP	7.45	□□□□□ -1.22

Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms