RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C SRP101P32916 621 aa6.21□□□□□ -1.42
DEF1YKL054C SEC9P40357 651 aa6.21□□□□□ -1.42
DEF1YKL054C IST3P40565 148 aaPredicted RBP6.21□□□□□ -1.42
DEF1YKL054C TAF4P50105 388 aa6.21□□□□□ -1.42
DEF1YKL054C GLO1P50107 326 aa6.21□□□□□ -1.42
DEF1YKL054C NUP84P52891 726 aa6.21□□□□□ -1.42
DEF1YKL054C TNA1P53322 534 aa6.21□□□□□ -1.42
DEF1YKL054C YGR266WP53326 701 aa6.21□□□□□ -1.42
DEF1YKL054C ORC4P54791 529 aa6.21□□□□□ -1.42
DEF1YKL054C REG1Q00816 1014 aa6.21□□□□□ -1.42
DEF1YKL054C YLR456WQ06199 204 aa6.21□□□□□ -1.42
DEF1YKL054C NOP6Q07623 225 aaKnown RBP6.21□□□□□ -1.42
DEF1YKL054C THI72Q08579 599 aa6.21□□□□□ -1.42
DEF1YKL054C PHM7Q12252 991 aa6.21□□□□□ -1.42
DEF1YKL054C RPS9AO13516 197 aaKnown RBP6.2□□□□□ -1.42
DEF1YKL054C CLB3P24870 427 aa6.2□□□□□ -1.42
DEF1YKL054C PRE4P30657 266 aa6.2□□□□□ -1.42
DEF1YKL054C NNK1P36003 928 aa6.2□□□□□ -1.42
DEF1YKL054C MUP3P38734 546 aa6.2□□□□□ -1.42
DEF1YKL054C CTM1P38818 585 aa6.2□□□□□ -1.42
DEF1YKL054C MTG2P38860 518 aa6.2□□□□□ -1.42
DEF1YKL054C RPA49Q01080 415 aaPredicted RBP6.2□□□□□ -1.42
DEF1YKL054C RRN5Q02983 363 aa6.2□□□□□ -1.42
DEF1YKL054C MUB1Q03162 620 aa6.2□□□□□ -1.42
DEF1YKL054C EFR3Q03653 782 aaKnown RBP6.2□□□□□ -1.42
DEF1YKL054C MSP1P28737 362 aa6.19□□□□□ -1.42
DEF1YKL054C YBL029WP38201 376 aa6.19□□□□□ -1.42
DEF1YKL054C CCT6P39079 546 aa6.19□□□□□ -1.42
DEF1YKL054C TED1P40533 473 aa6.19□□□□□ -1.42
DEF1YKL054C SOV1Q04748 898 aa6.19□□□□□ -1.42
DEF1YKL054C SPH1Q06160 661 aa6.19□□□□□ -1.42
DEF1YKL054C AIM6Q07716 390 aa6.19□□□□□ -1.42
DEF1YKL054C HRK1Q08732 759 aaKnown RBP6.19□□□□□ -1.42
DEF1YKL054C UPC2Q12151 913 aa6.19□□□□□ -1.42
DEF1YKL054C PET127P32606 800 aa6.19□□□□□ -1.42
DEF1YKL054C LOT5P34234 306 aa6.19□□□□□ -1.42
DEF1YKL054C COY1P34237 679 aa6.19□□□□□ -1.42
DEF1YKL054C YHR033WP38690 423 aa6.19□□□□□ -1.42
DEF1YKL054C PDR16P53860 351 aaKnown RBP6.19□□□□□ -1.42
DEF1YKL054C SDH1Q00711 640 aa6.19□□□□□ -1.42
DEF1YKL054C CWC21Q03375 135 aaKnown RBP6.19□□□□□ -1.42
DEF1YKL054C HOS1Q12214 470 aa6.19□□□□□ -1.42
DEF1YKL054C CTT1P06115 562 aa6.18□□□□□ -1.42
DEF1YKL054C RPL1AP0CX43 217 aaKnown RBP6.18□□□□□ -1.42
DEF1YKL054C RPL1BP0CX44 217 aaKnown RBP6.18□□□□□ -1.42
DEF1YKL054C RNA1P11745 407 aaKnown RBP6.18□□□□□ -1.42
DEF1YKL054C SSE1P32589 693 aaKnown RBP6.18□□□□□ -1.42
DEF1YKL054C ALY1P36117 915 aa6.18□□□□□ -1.42
DEF1YKL054C APN2P38207 520 aa6.18□□□□□ -1.42
DEF1YKL054C YDR089WP38966 869 aa6.18□□□□□ -1.42
DEF1YKL054C RAI1P53063 387 aaKnown RBP6.18□□□□□ -1.42
DEF1YKL054C VTC3Q02725 835 aa6.18□□□□□ -1.42
DEF1YKL054C TDA6Q06466 467 aa6.18□□□□□ -1.42
DEF1YKL054C RIM20Q12033 661 aa6.18□□□□□ -1.42
DEF1YKL054C FRS1P15624 595 aaKnown RBP6.18□□□□□ -1.42
DEF1YKL054C ADE2P21264 571 aaKnown RBP6.18□□□□□ -1.42
DEF1YKL054C UBP11P36026 717 aa6.18□□□□□ -1.42
DEF1YKL054C POL12P38121 705 aaPredicted RBP6.18□□□□□ -1.42
DEF1YKL054C VPS45P38932 577 aa6.18□□□□□ -1.42
DEF1YKL054C SGN1P40561 250 aaKnown RBP RIP-Chip data6.18□□□□□ -1.42not detected
DEF1YKL054C TAH11P47112 604 aa6.18□□□□□ -1.42
DEF1YKL054C ALT2P52892 507 aa6.18□□□□□ -1.42
DEF1YKL054C TAM41P53230 385 aa6.18□□□□□ -1.42
DEF1YKL054C TRS31Q03337 283 aa6.18□□□□□ -1.42
DEF1YKL054C LUC7Q07508 261 aaPredicted RBP6.18□□□□□ -1.42
DEF1YKL054C SLP1Q12232 587 aa6.18□□□□□ -1.42
DEF1YKL054C HMG2P12684 1045 aa6.17□□□□□ -1.42
DEF1YKL054C RRP43P25359 394 aaPredicted RBP6.17□□□□□ -1.42
DEF1YKL054C VID24P38263 362 aa6.17□□□□□ -1.42
DEF1YKL054C ATG21Q02887 496 aa6.17□□□□□ -1.42
DEF1YKL054C RPC11Q04307 110 aaPredicted RBP6.17□□□□□ -1.42
DEF1YKL054C MRD1Q06106 887 aaKnown RBP6.17□□□□□ -1.42
DEF1YKL054C YEH1Q07804 573 aa6.17□□□□□ -1.42
DEF1YKL054C OSW2Q12202 724 aa6.17□□□□□ -1.42
DEF1YKL054C AFI1Q99222 893 aa6.17□□□□□ -1.42
DEF1YKL054C SLN1P39928 1220 aaPredicted RBP6.17□□□□□ -1.42
DEF1YKL054C JHD1P40034 492 aa6.17□□□□□ -1.42
DEF1YKL054C SLZ1P40167 298 aa6.17□□□□□ -1.42
DEF1YKL054C DOT1Q04089 582 aaKnown RBP6.17□□□□□ -1.42
DEF1YKL054C YMR074CQ04773 145 aa6.17□□□□□ -1.42
DEF1YKL054C HER1Q12276 1246 aa6.17□□□□□ -1.42
DEF1YKL054C PHO84P25297 587 aaKnown RBP6.16□□□□□ -1.42
DEF1YKL054C SPC110P32380 944 aa6.16□□□□□ -1.42
DEF1YKL054C THI2P38141 450 aa6.16□□□□□ -1.42
DEF1YKL054C PFK26P40433 827 aaKnown RBP6.16□□□□□ -1.42
DEF1YKL054C YNR014WP53719 212 aa6.16□□□□□ -1.42
DEF1YKL054C VPS36Q06696 566 aa6.16□□□□□ -1.42
DEF1YKL054C TMA16Q08687 178 aa6.16□□□□□ -1.42
DEF1YKL054C LEU9Q12166 604 aaKnown RBP6.16□□□□□ -1.42
DEF1YKL054C YJR112W-AQ3E743 109 aa6.16□□□□□ -1.42
DEF1YKL054C YPT6Q99260 215 aa6.16□□□□□ -1.42
DEF1YKL054C YML002WP0CF17 737 aa6.15□□□□□ -1.42
DEF1YKL054C ARO3P14843 370 aaKnown RBP6.15□□□□□ -1.42
DEF1YKL054C MRPL25P23369 157 aa6.15□□□□□ -1.42
DEF1YKL054C YJU2P28320 278 aaPredicted RBP6.15□□□□□ -1.42
DEF1YKL054C ATG19P35193 415 aa6.15□□□□□ -1.42
DEF1YKL054C MRPL40P36534 297 aa6.15□□□□□ -1.42
DEF1YKL054C TDP1P38319 544 aa6.15□□□□□ -1.42
DEF1YKL054C YHR054CP38780 354 aa6.15□□□□□ -1.42
DEF1YKL054C SSY5P47002 699 aa6.15□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 35.1 ms