RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	PDR18	P53756	1333 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	ARA2	Q04212	335 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	YCG1	Q06680	1035 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	AAD4	Q07747	329 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	ENB1	Q08299	606 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	CLF1	Q12309	687 aa	Predicted RBP	4.26	□□□□□ -1.73
UBX5	YDR330W	SOD2	P00447	233 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	LAT1	P12695	482 aa	Known RBP	4.26	□□□□□ -1.73
UBX5	YDR330W	ARG1	P22768	420 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	KTR3	P38130	404 aa	Predicted RBP	4.26	□□□□□ -1.73
UBX5	YDR330W	GET2	P40056	285 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	YIR042C	P40586	236 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	SAP4	P53036	818 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	MRPS35	P53292	345 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	ESF2	P53743	316 aa	Known RBP	4.26	□□□□□ -1.73
UBX5	YDR330W	MDM1	Q01846	1127 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	FCP1	Q03254	732 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	RIM20	Q12033	661 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	RTP1	Q12751	981 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	YOL087C	Q99247	1116 aa		4.26	□□□□□ -1.73
UBX5	YDR330W	INH1	P01097	85 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	SUP35	P05453	685 aa	Known RBP	4.25	□□□□□ -1.73
UBX5	YDR330W	MET3	P08536	511 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	RNR2	P09938	399 aa	Known RBP	4.25	□□□□□ -1.73
UBX5	YDR330W	SEC12	P11655	471 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	NCP1	P16603	691 aa	Known RBP	4.25	□□□□□ -1.73
UBX5	YDR330W	AAP1	P37898	856 aa	Known RBP	4.25	□□□□□ -1.73
UBX5	YDR330W	NPR3	P38742	1146 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	UME6	P39001	836 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	GSM1	P42950	618 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	YGL082W	P53155	381 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	MTL1	P53214	551 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	MEP3	P53390	489 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	FDC1	Q03034	503 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	YDR056C	Q12025	205 aa		4.25	□□□□□ -1.73
UBX5	YDR330W	UBC1	P21734	215 aa	Known RBP	4.24	□□□□□ -1.73
UBX5	YDR330W	JNM1	P36224	373 aa		4.24	□□□□□ -1.73
UBX5	YDR330W	COS111	P38308	924 aa		4.24	□□□□□ -1.73
UBX5	YDR330W	SFB3	P38810	929 aa		4.24	□□□□□ -1.73
UBX5	YDR330W	NUP60	P39705	539 aa		4.24	□□□□□ -1.73
UBX5	YDR330W	FTR1	P40088	404 aa		4.24	□□□□□ -1.73
UBX5	YDR330W	BAP3	P41815	604 aa		4.24	□□□□□ -1.73
UBX5	YDR330W	LSB3	P43603	459 aa	Known RBP	4.24	□□□□□ -1.73
UBX5	YDR330W	NPA3	P47122	385 aa		4.24	□□□□□ -1.73
UBX5	YDR330W	DLT1	Q04216	342 aa		4.24	□□□□□ -1.73
UBX5	YDR330W	VPS20	Q04272	221 aa		4.24	□□□□□ -1.73
UBX5	YDR330W	CSR1	Q06705	408 aa	Known RBP	4.24	□□□□□ -1.73
UBX5	YDR330W	SAC3	P46674	1301 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	CAF20	P12962	161 aa	Known RBP	4.23	□□□□□ -1.73
UBX5	YDR330W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
UBX5	YDR330W	RIT1	P23796	513 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	RAD16	P31244	790 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	IMP2'	P32351	346 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	CDS1	P38221	457 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	CRG1	P38892	291 aa	RIP-Chip data	4.23	□□□□□ -1.73	not detected
UBX5	YDR330W	LYS9	P38999	446 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	BDH2	P39713	417 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	VFA1	P40080	203 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	PIG2	P40187	538 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	CAB2	P40506	365 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	RPN11	P43588	306 aa	Known RBP	4.23	□□□□□ -1.73
UBX5	YDR330W	INP52	P50942	1183 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	RIM8	P53179	542 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	PIB2	P53191	635 aa		4.23	□□□□□ -1.73
UBX5	YDR330W	TSR2	Q06672	205 aa	Known RBP	4.23	□□□□□ -1.73
UBX5	YDR330W	SNU66	Q12420	587 aa	Predicted RBP	4.23	□□□□□ -1.73
UBX5	YDR330W	CTT1	P06115	562 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	SNF1	P06782	633 aa	Known RBP	4.22	□□□□□ -1.73
UBX5	YDR330W	TRP4	P07285	380 aa	Predicted RBP	4.22	□□□□□ -1.73
UBX5	YDR330W	STE11	P23561	717 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	FEN2	P25621	512 aa	Known RBP	4.22	□□□□□ -1.73
UBX5	YDR330W	FRD1	P32614	470 aa	Known RBP	4.22	□□□□□ -1.73
UBX5	YDR330W	MPE1	P35728	441 aa	Known RBP	4.22	□□□□□ -1.73
UBX5	YDR330W	AIM3	P38266	947 aa	Known RBP	4.22	□□□□□ -1.73
UBX5	YDR330W	YIL077C	P40508	320 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	IMA1	P53051	589 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	ERG5	P54781	538 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	ACS1	Q01574	713 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	UBP16	Q02863	499 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	ATG21	Q02887	496 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	VID22	Q05934	901 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	TMA10	Q06177	86 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	YFT2	Q06676	274 aa		4.22	□□□□□ -1.73
UBX5	YDR330W	SSK22	P25390	1331 aa	Predicted RBP	4.22	□□□□□ -1.73
UBX5	YDR330W	ADE3	P07245	946 aa	Known RBP	4.21	□□□□□ -1.73
UBX5	YDR330W	TUP1	P16649	713 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	SWI4	P25302	1093 aa	Known RBP	4.21	□□□□□ -1.73
UBX5	YDR330W	NTH1	P32356	751 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	MVD1	P32377	396 aa	Known RBP	4.21	□□□□□ -1.73
UBX5	YDR330W	LST4	P34239	828 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	FSH1	P38777	243 aa	Known RBP	4.21	□□□□□ -1.73
UBX5	YDR330W	FMO1	P38866	432 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	NPR2	P39923	615 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	ELO3	P40319	345 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	POL31	P46957	487 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	YDL183C	P48569	320 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	CTF18	P49956	741 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	MUP1	P50276	574 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	HST1	P53685	503 aa		4.21	□□□□□ -1.73
UBX5	YDR330W	BIK1	P11709	440 aa		4.21	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms