Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YML009W-BYML009W-B 477 nt26.52■■□□□ 1.84
RPN11P43588 NOP1YDL014W 984 nt26.07■■□□□ 1.76
RPN11P43588 NSR1YGR159C 1245 nt25.62■■□□□ 1.69
RPN11P43588 YKL036CYKL036C 393 nt24.86■■□□□ 1.57
RPN11P43588 YJL027CYJL027C 417 nt23.36■■□□□ 1.33
RPN11P43588 Q0297Q0297 156 nt23.13■■□□□ 1.29
RPN11P43588 SCS3YGL126W 1143 nt23.07■■□□□ 1.28
RPN11P43588 SRX1YKL086W 384 nt22.82■■□□□ 1.24
RPN11P43588 MDJ1YFL016C 1536 nt22.02■■□□□ 1.12
RPN11P43588 YCR051WYCR051W 669 nt21.72■■□□□ 1.07
RPN11P43588 YOL085CYOL085C 342 nt21.54■■□□□ 1.04
RPN11P43588 SCJ1YMR214W 1134 nt21.42■■□□□ 1.02
RPN11P43588 PKP1YIL042C 1185 nt21.13■□□□□ 0.97
RPN11P43588 ATS1YAL020C 1002 nt20.87■□□□□ 0.93
RPN11P43588 RPP1BYDL130W 321 nt20.76■□□□□ 0.91
RPN11P43588 TRN1tP(UGG)A 72 nt20.16■□□□□ 0.82
RPN11P43588 SUF9tP(UGG)F 72 nt20.16■□□□□ 0.82
RPN11P43588 SUF8tP(UGG)H 72 nt20.16■□□□□ 0.82
RPN11P43588 tP(UGG)LtP(UGG)L 72 nt20.16■□□□□ 0.82
RPN11P43588 SUF7tP(UGG)M 72 nt20.16■□□□□ 0.82
RPN11P43588 tP(UGG)N1tP(UGG)N1 72 nt20.16■□□□□ 0.82
RPN11P43588 tP(UGG)N2tP(UGG)N2 72 nt20.16■□□□□ 0.82
RPN11P43588 tP(UGG)O1tP(UGG)O1 72 nt20.16■□□□□ 0.82
RPN11P43588 SUF11tP(UGG)O2 72 nt20.16■□□□□ 0.82
RPN11P43588 CCC1YLR220W 969 nt19.98■□□□□ 0.79
RPN11P43588 DBP2YNL112W 1641 nt19.84■□□□□ 0.77
RPN11P43588 PET122YER153C 765 nt19.76■□□□□ 0.75
RPN11P43588 SCR1SCR1 522 nt19.72■□□□□ 0.75
RPN11P43588 RTC3YHR087W 336 nt19.5■□□□□ 0.71
RPN11P43588 tP(UGG)O3tP(UGG)O3 72 nt19.35■□□□□ 0.69
RPN11P43588 RRN5YLR141W 1092 nt19.28■□□□□ 0.68
RPN11P43588 PST2YDR032C 597 nt19.2■□□□□ 0.66
RPN11P43588 RSB1YOR049C 1065 nt19.11■□□□□ 0.65
RPN11P43588 YER088W-BYER088W-B 147 nt18.91■□□□□ 0.62
RPN11P43588 YKL097CYKL097C 411 nt18.84■□□□□ 0.61
RPN11P43588 RVS167YDR388W 1449 nt18.75■□□□□ 0.59
RPN11P43588 YDJ1YNL064C 1230 nt18.68■□□□□ 0.58
RPN11P43588 YBR190WYBR190W 312 nt18.52■□□□□ 0.56
RPN11P43588 SHR5YOL110W 714 nt18.33■□□□□ 0.52
RPN11P43588 SHU1YHL006C 453 nt18.23■□□□□ 0.51
RPN11P43588 GAR1YHR089C 618 nt18.17■□□□□ 0.5
RPN11P43588 YOR139CYOR139C 393 nt17.99■□□□□ 0.47
RPN11P43588 YAL037C-BYAL037C-B 975 nt17.72■□□□□ 0.43
RPN11P43588 NPL3YDR432W 1245 nt17.59■□□□□ 0.41
RPN11P43588 DEP1YAL013W 1218 nt17.57■□□□□ 0.4
RPN11P43588 TIR1YER011W 765 nt17.51■□□□□ 0.39
RPN11P43588 YNL208WYNL208W 600 nt17.35■□□□□ 0.37
RPN11P43588 URN1YPR152C 1398 nt17.31■□□□□ 0.36
RPN11P43588 tM(CAU)CtM(CAU)C 72 nt17.22■□□□□ 0.35
RPN11P43588 IMT4tM(CAU)E 72 nt17.22■□□□□ 0.35
RPN11P43588 IMT3tM(CAU)J3 72 nt17.22■□□□□ 0.35
RPN11P43588 IMT1tM(CAU)O1 72 nt17.22■□□□□ 0.35
RPN11P43588 IMT2tM(CAU)P 72 nt17.22■□□□□ 0.35
RPN11P43588 RPN10YHR200W 807 nt17.2■□□□□ 0.34
RPN11P43588 SSA1YAL005C 1929 nt17.15■□□□□ 0.34
RPN11P43588 MNP1YGL068W 585 nt17.08■□□□□ 0.32
RPN11P43588 SRB2YHR041C 633 nt17.08■□□□□ 0.32
RPN11P43588 YOL037CYOL037C 354 nt17.07■□□□□ 0.32
RPN11P43588 HOM6YJR139C 1080 nt17.03■□□□□ 0.32
RPN11P43588 YGR021WYGR021W 873 nt17■□□□□ 0.31
RPN11P43588 WWM1YFL010C 636 nt16.91■□□□□ 0.3
RPN11P43588 OPI9YLR338W 858 nt16.89■□□□□ 0.29
RPN11P43588 MOT3YMR070W 1473 nt16.87■□□□□ 0.29
RPN11P43588 BSC6YOL137W 1494 nt16.82■□□□□ 0.28
RPN11P43588 RKM5YLR137W 1104 nt16.77■□□□□ 0.28
RPN11P43588 PUS2YGL063W 1113 nt16.76■□□□□ 0.27
RPN11P43588 YLR281CYLR281C 468 nt16.66■□□□□ 0.26
RPN11P43588 SAH1YER043C 1350 nt16.59■□□□□ 0.25
RPN11P43588 YFL021C-AYFL021C-A 855 nt16.58■□□□□ 0.24
RPN11P43588 YJR018WYJR018W 363 nt16.56■□□□□ 0.24
RPN11P43588 YJR120WYJR120W 351 nt16.54■□□□□ 0.24
RPN11P43588 WHI5YOR083W 888 nt16.48■□□□□ 0.23
RPN11P43588 MRPL8YJL063C 717 nt16.47■□□□□ 0.23
RPN11P43588 SSA3YBL075C 1950 nt16.45■□□□□ 0.22
RPN11P43588 RPP2BYDR382W 333 nt16.42■□□□□ 0.22
RPN11P43588 PUN1YLR414C 792 nt16.39■□□□□ 0.21
RPN11P43588 FMP45YDL222C 930 nt16.35■□□□□ 0.21
RPN11P43588 YPR011CYPR011C 981 nt16.32■□□□□ 0.2
RPN11P43588 UBX6YJL048C 1191 nt16.3■□□□□ 0.2
RPN11P43588 BDH2YAL061W 1254 nt16.26■□□□□ 0.19
RPN11P43588 YCH1YGR203W 447 nt16.23■□□□□ 0.19
RPN11P43588 PUT4YOR348C 1884 nt16.21■□□□□ 0.19
RPN11P43588 LSM3YLR438C-A 270 nt16.2■□□□□ 0.18
RPN11P43588 DSK2YMR276W 1122 nt16.2■□□□□ 0.18
RPN11P43588 ARE1YCR048W 1833 nt16.19■□□□□ 0.18
RPN11P43588 YLR236CYLR236C 324 nt16.18■□□□□ 0.18
RPN11P43588 ADO1YJR105W 1023 nt16.16■□□□□ 0.18
RPN11P43588 PTC2YER089C 1395 nt16.08■□□□□ 0.16
RPN11P43588 YEL076C-AYEL076C-A 651 nt16.07■□□□□ 0.16
RPN11P43588 YEL076CYEL076C 651 nt16.07■□□□□ 0.16
RPN11P43588 YLR464WYLR464W 651 nt16.07■□□□□ 0.16
RPN11P43588 IMP2'YIL154C 1041 nt16.05■□□□□ 0.16
RPN11P43588 YHR049C-AYHR049C-A 297 nt15.95■□□□□ 0.14
RPN11P43588 RTG1YOL067C 534 nt15.92■□□□□ 0.14
RPN11P43588 SPP1YPL138C 1062 nt15.92■□□□□ 0.14
RPN11P43588 YLR154C-GYLR154C-G 150 nt15.88■□□□□ 0.13
RPN11P43588 SIS1YNL007C 1059 nt15.86■□□□□ 0.13
RPN11P43588 INM2YDR287W 879 nt15.85■□□□□ 0.13
RPN11P43588 YBL100CYBL100C 315 nt15.85■□□□□ 0.13
RPN11P43588 LPX1YOR084W 1164 nt15.85■□□□□ 0.13
Retrieved 100 of 7,029 protein–RNA pairs in 13.1 ms