Protein–RNA interactions for Protein: P39705

NUP60, Nucleoporin NUP60, yeastyeast

Predictions only

Length 539 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
NUP60P39705 YML009W-BYML009W-B 477 nt21.31■■□□□ 1
NUP60P39705 NSR1YGR159C 1245 nt20.96■□□□□ 0.95
NUP60P39705 NOP1YDL014W 984 nt20.84■□□□□ 0.93
NUP60P39705 YKL036CYKL036C 393 nt19.46■□□□□ 0.71
NUP60P39705 MDJ1YFL016C 1536 nt18.35■□□□□ 0.53
NUP60P39705 Q0297Q0297 156 nt18.3■□□□□ 0.52
NUP60P39705 YJL027CYJL027C 417 nt18.22■□□□□ 0.51
NUP60P39705 SRX1YKL086W 384 nt18.19■□□□□ 0.5
NUP60P39705 SCS3YGL126W 1143 nt17.81■□□□□ 0.44
NUP60P39705 YCR051WYCR051W 669 nt17.29■□□□□ 0.36
NUP60P39705 YOL085CYOL085C 342 nt16.83■□□□□ 0.28
NUP60P39705 PKP1YIL042C 1185 nt16.55■□□□□ 0.24
NUP60P39705 RPP1BYDL130W 321 nt16.43■□□□□ 0.22
NUP60P39705 DBP2YNL112W 1641 nt16.31■□□□□ 0.2
NUP60P39705 TRN1tP(UGG)A 72 nt16.29■□□□□ 0.2
NUP60P39705 SUF9tP(UGG)F 72 nt16.29■□□□□ 0.2
NUP60P39705 SUF8tP(UGG)H 72 nt16.29■□□□□ 0.2
NUP60P39705 tP(UGG)LtP(UGG)L 72 nt16.29■□□□□ 0.2
NUP60P39705 SUF7tP(UGG)M 72 nt16.29■□□□□ 0.2
NUP60P39705 tP(UGG)N1tP(UGG)N1 72 nt16.29■□□□□ 0.2
NUP60P39705 tP(UGG)N2tP(UGG)N2 72 nt16.29■□□□□ 0.2
NUP60P39705 tP(UGG)O1tP(UGG)O1 72 nt16.29■□□□□ 0.2
NUP60P39705 SUF11tP(UGG)O2 72 nt16.29■□□□□ 0.2
NUP60P39705 CCC1YLR220W 969 nt16.14■□□□□ 0.17
NUP60P39705 SCJ1YMR214W 1134 nt16.12■□□□□ 0.17
NUP60P39705 ATS1YAL020C 1002 nt16.01■□□□□ 0.15
NUP60P39705 PET122YER153C 765 nt15.65■□□□□ 0.1
NUP60P39705 SCR1SCR1 522 nt15.59■□□□□ 0.09
NUP60P39705 YBR190WYBR190W 312 nt15.59■□□□□ 0.09
NUP60P39705 SSA3YBL075C 1950 nt15.55■□□□□ 0.08
NUP60P39705 tP(UGG)O3tP(UGG)O3 72 nt15.5■□□□□ 0.07
NUP60P39705 RVS167YDR388W 1449 nt15.46■□□□□ 0.07
NUP60P39705 RTC3YHR087W 336 nt15.28■□□□□ 0.04
NUP60P39705 RRN5YLR141W 1092 nt15.23■□□□□ 0.03
NUP60P39705 RSB1YOR049C 1065 nt15.01□□□□□ -0.01
NUP60P39705 YDJ1YNL064C 1230 nt15□□□□□ -0.01
NUP60P39705 SHR5YOL110W 714 nt14.96□□□□□ -0.01
NUP60P39705 YER088W-BYER088W-B 147 nt14.93□□□□□ -0.02
NUP60P39705 PST2YDR032C 597 nt14.77□□□□□ -0.05
NUP60P39705 GAR1YHR089C 618 nt14.62□□□□□ -0.07
NUP60P39705 DEP1YAL013W 1218 nt14.45□□□□□ -0.1
NUP60P39705 URN1YPR152C 1398 nt14.38□□□□□ -0.11
NUP60P39705 YKL097CYKL097C 411 nt14.35□□□□□ -0.11
NUP60P39705 RPN10YHR200W 807 nt14.26□□□□□ -0.13
NUP60P39705 YNL208WYNL208W 600 nt14.26□□□□□ -0.13
NUP60P39705 TIR1YER011W 765 nt14.12□□□□□ -0.15
NUP60P39705 OPI9YLR338W 858 nt14.12□□□□□ -0.15
NUP60P39705 SHU1YHL006C 453 nt14.11□□□□□ -0.15
NUP60P39705 PUT4YOR348C 1884 nt14.1□□□□□ -0.15
NUP60P39705 SAH1YER043C 1350 nt13.96□□□□□ -0.18
NUP60P39705 SSA1YAL005C 1929 nt13.88□□□□□ -0.19
NUP60P39705 YAL037C-BYAL037C-B 975 nt13.82□□□□□ -0.2
NUP60P39705 ARE1YCR048W 1833 nt13.76□□□□□ -0.21
NUP60P39705 YJR018WYJR018W 363 nt13.74□□□□□ -0.21
NUP60P39705 PUN1YLR414C 792 nt13.73□□□□□ -0.21
NUP60P39705 YOR139CYOR139C 393 nt13.7□□□□□ -0.22
NUP60P39705 SRB2YHR041C 633 nt13.67□□□□□ -0.22
NUP60P39705 POA1YBR022W 534 nt13.61□□□□□ -0.23
NUP60P39705 YHR049C-AYHR049C-A 297 nt13.6□□□□□ -0.23
NUP60P39705 NPL3YDR432W 1245 nt13.57□□□□□ -0.24
NUP60P39705 RPP2BYDR382W 333 nt13.56□□□□□ -0.24
NUP60P39705 YGR021WYGR021W 873 nt13.56□□□□□ -0.24
NUP60P39705 YJR120WYJR120W 351 nt13.55□□□□□ -0.24
NUP60P39705 SPT5YML010W 3192 nt13.55□□□□□ -0.24
NUP60P39705 WWM1YFL010C 636 nt13.53□□□□□ -0.24
NUP60P39705 SSA4YER103W 1929 nt13.52□□□□□ -0.25
NUP60P39705 PTC2YER089C 1395 nt13.5□□□□□ -0.25
NUP60P39705 HOM6YJR139C 1080 nt13.5□□□□□ -0.25
NUP60P39705 MNP1YGL068W 585 nt13.47□□□□□ -0.25
NUP60P39705 BSC6YOL137W 1494 nt13.45□□□□□ -0.26
NUP60P39705 YOL037CYOL037C 354 nt13.37□□□□□ -0.27
NUP60P39705 BUD23YCR047C 828 nt13.33□□□□□ -0.28
NUP60P39705 YFL021C-AYFL021C-A 855 nt13.33□□□□□ -0.28
NUP60P39705 BDH2YAL061W 1254 nt13.31□□□□□ -0.28
NUP60P39705 RKM5YLR137W 1104 nt13.31□□□□□ -0.28
NUP60P39705 NAB2YGL122C 1578 nt13.29□□□□□ -0.28
NUP60P39705 INM2YDR287W 879 nt13.23□□□□□ -0.29
NUP60P39705 LSM3YLR438C-A 270 nt13.19□□□□□ -0.3
NUP60P39705 DAL1YIR027C 1383 nt13.18□□□□□ -0.3
NUP60P39705 tM(CAU)CtM(CAU)C 72 nt13.15□□□□□ -0.3
NUP60P39705 IMT4tM(CAU)E 72 nt13.15□□□□□ -0.3
NUP60P39705 IMT3tM(CAU)J3 72 nt13.15□□□□□ -0.3
NUP60P39705 IMT1tM(CAU)O1 72 nt13.15□□□□□ -0.3
NUP60P39705 IMT2tM(CAU)P 72 nt13.15□□□□□ -0.3
NUP60P39705 FPR4YLR449W 1179 nt13.15□□□□□ -0.3
NUP60P39705 BDF1YLR399C 2061 nt13.14□□□□□ -0.31
NUP60P39705 YBL100CYBL100C 315 nt13.14□□□□□ -0.31
NUP60P39705 FIS1YIL065C 468 nt13.11□□□□□ -0.31
NUP60P39705 PHO4YFR034C 939 nt13.03□□□□□ -0.32
NUP60P39705 TRM9YML014W 840 nt13.03□□□□□ -0.32
NUP60P39705 YLR281CYLR281C 468 nt13.02□□□□□ -0.33
NUP60P39705 PAC11YDR488C 1602 nt12.99□□□□□ -0.33
NUP60P39705 PUS2YGL063W 1113 nt12.99□□□□□ -0.33
NUP60P39705 FUN26YAL022C 1554 nt12.98□□□□□ -0.33
NUP60P39705 WHI5YOR083W 888 nt12.95□□□□□ -0.34
NUP60P39705 TAT1YBR069C 1860 nt12.93□□□□□ -0.34
NUP60P39705 CCT6YDR188W 1641 nt12.86□□□□□ -0.35
NUP60P39705 ALF1YNL148C 765 nt12.77□□□□□ -0.37
NUP60P39705 SUF2tP(AGG)C 72 nt12.76□□□□□ -0.37
NUP60P39705 SUF10tP(AGG)N 72 nt12.76□□□□□ -0.37
Retrieved 100 of 7,029 protein–RNA pairs in 10.6 ms