RNA–Protein interactions for RNA: YPR049C

ATG11, Transcript of Adapter protein for pexophagy and the Cvt targeting pathway, yeast

Gene ATG11, Length 3,537 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG11	YPR049C	SPO14	P36126	1683 aa		4.84	□□□□□ -1.63
ATG11	YPR049C	PAN1	P32521	1480 aa		4.82	□□□□□ -1.64
ATG11	YPR049C	UFD4	P33202	1483 aa		4.79	□□□□□ -1.64
ATG11	YPR049C	TAF2	P23255	1407 aa		4.79	□□□□□ -1.64
ATG11	YPR049C	GEA2	P39993	1459 aa	Known RBP	4.79	□□□□□ -1.64
ATG11	YPR049C	PRI1	P10363	409 aa		4.78	□□□□□ -1.64
ATG11	YPR049C	DOP1	Q03921	1698 aa		4.78	□□□□□ -1.64
ATG11	YPR049C	AVT3	P36062	692 aa		4.77	□□□□□ -1.65
ATG11	YPR049C	TFA1	P36100	482 aa		4.73	□□□□□ -1.65
ATG11	YPR049C	SSN2	P38931	1420 aa		4.73	□□□□□ -1.65
ATG11	YPR049C	YIL055C	P40523	627 aa	Known RBP	4.71	□□□□□ -1.66
ATG11	YPR049C	YAH1	Q12184	172 aa	Known RBP	4.71	□□□□□ -1.66
ATG11	YPR049C	CHC1	P22137	1653 aa	Known RBP	4.71	□□□□□ -1.66
ATG11	YPR049C	TOP2	P06786	1428 aa	Known RBP	4.7	□□□□□ -1.66
ATG11	YPR049C	PTP3	P40048	928 aa		4.7	□□□□□ -1.66
ATG11	YPR049C	HAA1	Q12753	694 aa	Known RBP	4.69	□□□□□ -1.66
ATG11	YPR049C	VPS15	P22219	1454 aa		4.68	□□□□□ -1.66
ATG11	YPR049C	MMS22	Q06164	1454 aa		4.67	□□□□□ -1.66
ATG11	YPR049C	SNT2	P53127	1403 aa		4.67	□□□□□ -1.66
ATG11	YPR049C	PDR12	Q02785	1511 aa		4.66	□□□□□ -1.66
ATG11	YPR049C	MLP2	P40457	1679 aa		4.65	□□□□□ -1.66
ATG11	YPR049C	PDR15	Q04182	1529 aa	Known RBP	4.65	□□□□□ -1.67
ATG11	YPR049C	SKI3	P17883	1432 aa	Known RBP	4.64	□□□□□ -1.67
ATG11	YPR049C	POL1	P13382	1468 aa		4.64	□□□□□ -1.67
ATG11	YPR049C	DNF3	Q12674	1656 aa		4.64	□□□□□ -1.67
ATG11	YPR049C	MMS1	Q06211	1407 aa		4.63	□□□□□ -1.67
ATG11	YPR049C	NUP170	P38181	1502 aa		4.63	□□□□□ -1.67
ATG11	YPR049C	SMC4	Q12267	1418 aa		4.63	□□□□□ -1.67
ATG11	YPR049C	RQC2	Q12532	1038 aa	Known RBP	4.63	□□□□□ -1.67
ATG11	YPR049C	YOR1	P53049	1477 aa		4.62	□□□□□ -1.67
ATG11	YPR049C	NUP159	P40477	1460 aa		4.61	□□□□□ -1.67
ATG11	YPR049C	VTH1	P40438	1549 aa		4.61	□□□□□ -1.67
ATG11	YPR049C	VTH2	P40890	1549 aa		4.61	□□□□□ -1.67
ATG11	YPR049C	ARO1	P08566	1588 aa	Known RBP	4.61	□□□□□ -1.67
ATG11	YPR049C	HAP1	P0CE41	1502 aa		4.61	□□□□□ -1.67
ATG11	YPR049C	TRM3	Q07527	1436 aa		4.61	□□□□□ -1.67
ATG11	YPR049C	ULS1	Q08562	1619 aa		4.6	□□□□□ -1.67
ATG11	YPR049C	SNQ2	P32568	1501 aa	Known RBP	4.6	□□□□□ -1.67
ATG11	YPR049C	GDB1	Q06625	1536 aa		4.58	□□□□□ -1.68
ATG11	YPR049C	YFR006W	P43590	535 aa		4.57	□□□□□ -1.68
ATG11	YPR049C	TY3B-G	Q99315	1547 aa		4.56	□□□□□ -1.68
ATG11	YPR049C	TRM732	Q03496	1420 aa		4.55	□□□□□ -1.68
ATG11	YPR049C	ITT1	Q04638	464 aa		4.55	□□□□□ -1.68
ATG11	YPR049C	DRS2	P39524	1355 aa		4.54	□□□□□ -1.68
ATG11	YPR049C	MYO4	P32492	1471 aa		4.53	□□□□□ -1.68
ATG11	YPR049C	BUD3	P25558	1636 aa		4.53	□□□□□ -1.68
ATG11	YPR049C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
ATG11	YPR049C	PDR10	P51533	1564 aa		4.53	□□□□□ -1.68
ATG11	YPR049C	SPP41	P38904	1435 aa		4.5	□□□□□ -1.69
ATG11	YPR049C	HO	P09932	586 aa		4.49	□□□□□ -1.69
ATG11	YPR049C	TSC11	P40061	1430 aa		4.49	□□□□□ -1.69
ATG11	YPR049C	USO1	P25386	1790 aa		4.46	□□□□□ -1.69
ATG11	YPR049C	TY1B-NL2	Q99337	1749 aa	Known RBP	4.46	□□□□□ -1.7
ATG11	YPR049C	STU1	P38198	1513 aa		4.45	□□□□□ -1.7
ATG11	YPR049C	NUP188	P52593	1655 aa	Known RBP	4.43	□□□□□ -1.7
ATG11	YPR049C	YBT1	P32386	1661 aa		4.42	□□□□□ -1.7
ATG11	YPR049C	DCD1	P06773	312 aa		4.41	□□□□□ -1.7
ATG11	YPR049C	IQG1	Q12280	1495 aa		4.41	□□□□□ -1.7
ATG11	YPR049C	BBC1	P47068	1157 aa		4.41	□□□□□ -1.7
ATG11	YPR049C	YRF1-2	P40105	1681 aa		4.38	□□□□□ -1.71
ATG11	YPR049C	SCY1	P53009	804 aa		4.37	□□□□□ -1.71
ATG11	YPR049C	YGL015C	P33199	130 aa		4.36	□□□□□ -1.71
ATG11	YPR049C	SEC7	P11075	2009 aa	Known RBP	4.35	□□□□□ -1.71
ATG11	YPR049C	VMR1	P38735	1592 aa		4.34	□□□□□ -1.71
ATG11	YPR049C	IML1	P47170	1584 aa		4.33	□□□□□ -1.72
ATG11	YPR049C	ABP1	P15891	592 aa	Known RBP	4.32	□□□□□ -1.72
ATG11	YPR049C	SSP1	P38871	571 aa		4.32	□□□□□ -1.72
ATG11	YPR049C	GTT3	P39996	337 aa		4.32	□□□□□ -1.72
ATG11	YPR049C	RSM7	P47150	247 aa		4.28	□□□□□ -1.72
ATG11	YPR049C	SLX5	P32828	619 aa	Known RBP	4.28	□□□□□ -1.72
ATG11	YPR049C	TIF4632	P39936	914 aa	Known RBP	4.28	□□□□□ -1.73
ATG11	YPR049C	CDC27	P38042	758 aa		4.24	□□□□□ -1.73
ATG11	YPR049C	BCK1	Q01389	1478 aa		4.23	□□□□□ -1.73
ATG11	YPR049C	MAP2	P38174	421 aa	Known RBP	4.21	□□□□□ -1.74
ATG11	YPR049C	RIM101	P33400	625 aa		4.21	□□□□□ -1.74
ATG11	YPR049C	SPT21	P35209	758 aa		4.2	□□□□□ -1.74
ATG11	YPR049C	PIB1	Q06651	286 aa		4.2	□□□□□ -1.74
ATG11	YPR049C	TFC8	Q12308	588 aa		4.2	□□□□□ -1.74
ATG11	YPR049C	AI2	P03876	854 aa		4.18	□□□□□ -1.74
ATG11	YPR049C	CAT8	P39113	1433 aa		4.18	□□□□□ -1.74
ATG11	YPR049C	STH1	P32597	1359 aa		4.17	□□□□□ -1.74
ATG11	YPR049C	MRM1	P25270	412 aa		4.17	□□□□□ -1.74
ATG11	YPR049C	YKR023W	P36119	530 aa	Known RBP	4.17	□□□□□ -1.74
ATG11	YPR049C	PDR5	P33302	1511 aa	Known RBP	4.15	□□□□□ -1.74
ATG11	YPR049C	MET10	P39692	1035 aa		4.15	□□□□□ -1.75
ATG11	YPR049C	WSC3	Q12215	556 aa		4.15	□□□□□ -1.75
ATG11	YPR049C	YTA7	P40340	1379 aa		4.15	□□□□□ -1.75
ATG11	YPR049C	NUP192	P47054	1683 aa		4.14	□□□□□ -1.75
ATG11	YPR049C	NUP157	P40064	1391 aa	Known RBP	4.14	□□□□□ -1.75
ATG11	YPR049C	YSP2	Q06681	1438 aa		4.14	□□□□□ -1.75
ATG11	YPR049C	DMA1	P38823	416 aa		4.13	□□□□□ -1.75
ATG11	YPR049C	EPS1	P40557	701 aa		4.13	□□□□□ -1.75
ATG11	YPR049C	GCN2	P15442	1659 aa		4.12	□□□□□ -1.75
ATG11	YPR049C	OXP1	P28273	1286 aa		4.12	□□□□□ -1.75
ATG11	YPR049C	RRP5	Q05022	1729 aa	Known RBP	4.11	□□□□□ -1.75
ATG11	YPR049C	BCH2	P36122	765 aa		4.11	□□□□□ -1.75
ATG11	YPR049C	UBP10	P53874	792 aa	Predicted RBP	4.11	□□□□□ -1.75
ATG11	YPR049C	MGA2	P40578	1113 aa		4.09	□□□□□ -1.76
ATG11	YPR049C	UBP9	P39967	754 aa		4.07	□□□□□ -1.76
ATG11	YPR049C	FKS3	Q04952	1785 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms