RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHS3	YOR054C	DRN1	P53255	507 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	OSH6	Q02201	448 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	RSC2	Q06488	889 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	YDR306C	Q06640	478 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	MCM21	Q06675	368 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	SGO1	Q08490	590 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	TMA46	Q12000	345 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	CDC53	Q12018	815 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	ADR1	P07248	1323 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	LEU1	P07264	779 aa	Known RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	YAP1	P19880	650 aa	Known RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	RET1	P22276	1149 aa	Known RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	URE2	P23202	354 aa	Known RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	CLB3	P24870	427 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	LCB1	P25045	558 aa	Known RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
VHS3	YOR054C	ACH1	P32316	526 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	SMI1	P32566	505 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	ARC19	P33204	171 aa	Known RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	BCK2	P33306	851 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	BMH2	P34730	273 aa	Known RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	MCD4	P36051	919 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	GIP1	P38229	639 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	YHL012W	P38709	493 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	BCD1	P38772	366 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	ULP2	P40537	1034 aa	Predicted RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	VNX1	P42839	908 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	MET12	P46151	657 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	RPC17	P47076	161 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	CWC25	P53854	179 aa	Known RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	ALD6	P54115	500 aa	Known RBP	4.25	□□□□□ -1.73
VHS3	YOR054C	SRL4	Q03085	281 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	TAF12	Q03761	539 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	FMP42	Q04991	504 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	YEH2	Q07950	538 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	AVO1	Q08236	1176 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	PCL8	Q08966	492 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	DAS2	Q12084	232 aa		4.25	□□□□□ -1.73
VHS3	YOR054C	HSF1	P10961	833 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	YME1	P32795	747 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	RPT5	P33297	434 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	SPC42	P36094	363 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	SLM4	P38247	162 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	NMD5	P46970	1048 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	MPS2	P53159	387 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	SPP1	Q03012	353 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	DIG1	Q03063	452 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	ATG29	Q12092	213 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	MNL2	Q12205	849 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	RAD61	Q99359	647 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
VHS3	YOR054C	CBP3	P21560	335 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	PRP22	P24384	1145 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	PAT1	P25644	796 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	SMY1	P32364	656 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	SUV3	P32580	737 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	VMA8	P32610	256 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	FRD1	P32614	470 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	SLA1	P32790	1244 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	MRPL40	P36534	297 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	GRX7	P38068	203 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	PPS1	P38148	807 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	YBR032W	P38223	100 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	YHR112C	P38716	378 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	RPN10	P38886	268 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	IOC3	P43596	787 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	SSN8	P47821	323 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	VMA10	P48836	114 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	USE1	P53146	245 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	RBG2	P53295	368 aa	Known RBP	4.24	□□□□□ -1.73
VHS3	YOR054C	IPI3	P53877	555 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	CTF4	Q01454	927 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	NNT1	Q05874	261 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	YDL114W	Q07530	308 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	GPI13	Q07830	1017 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	PSR2	Q07949	397 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	ACF2	Q12168	779 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	EMP46	Q12396	444 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	YPT6	Q99260	215 aa		4.24	□□□□□ -1.73
VHS3	YOR054C	CDC6	P09119	513 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	ILS1	P09436	1072 aa	Known RBP	4.23	□□□□□ -1.73
VHS3	YOR054C	ATR1	P13090	542 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	HSP60	P19882	572 aa	Known RBP	4.23	□□□□□ -1.73
VHS3	YOR054C	RPB4	P20433	221 aa	Predicted RBP	4.23	□□□□□ -1.73
VHS3	YOR054C	SDH2	P21801	266 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	MSM1	P22438	575 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	CAD1	P24813	409 aa	Known RBP	4.23	□□□□□ -1.73
VHS3	YOR054C	OCA4	P25366	362 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	RPS5	P26783	225 aa	Known RBP	4.23	□□□□□ -1.73
VHS3	YOR054C	PLC1	P32383	869 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	SSO1	P32867	290 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	PEX5	P35056	612 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	NUP133	P36161	1157 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	YRO2	P38079	344 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	OCA5	P38738	679 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	RPH1	P39956	796 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	KTR7	P40504	517 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	PAN2	P53010	1115 aa	Predicted RBP	4.23	□□□□□ -1.73
VHS3	YOR054C	YNL115C	P53925	644 aa		4.23	□□□□□ -1.73
VHS3	YOR054C	FCP1	Q03254	732 aa		4.23	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 45.3 ms