RNA–Protein interactions for RNA: YDR460W

TFB3, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB3, Length 966 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB3	YDR460W	ATG26	Q06321	1198 aa		4.92	□□□□□ -1.62
TFB3	YDR460W	SCM3	Q12334	223 aa		4.92	□□□□□ -1.62
TFB3	YDR460W	LSO2	Q3E772	92 aa	Known RBP	4.92	□□□□□ -1.62
TFB3	YDR460W	HTS1	P07263	546 aa	Known RBP	4.91	□□□□□ -1.62
TFB3	YDR460W	PET494	P07390	489 aa	Predicted RBP	4.91	□□□□□ -1.62
TFB3	YDR460W	CDC16	P09798	840 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	PET122	P10355	254 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	KRS1	P15180	591 aa	Known RBP	4.91	□□□□□ -1.62
TFB3	YDR460W	CDC60	P26637	1090 aa	Known RBP	4.91	□□□□□ -1.62
TFB3	YDR460W	TRK2	P28584	889 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	FES1	P38260	290 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	RRM3	P38766	723 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	SIT1	P39980	628 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	BUD16	P39988	312 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	TED1	P40533	473 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	VID28	P40547	921 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	PHB1	P40961	287 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	VPS53	P47061	822 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	ORM1	P53224	222 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	UTP22	P53254	1237 aa	Predicted RBP	4.91	□□□□□ -1.62
TFB3	YDR460W	ALF1	P53904	254 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	PEX13	P80667	386 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	KIN4	Q01919	800 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	TAF8	Q03750	510 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	VPS20	Q04272	221 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	GYL1	Q04322	720 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	KRE28	Q04431	385 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	SPC24	Q04477	213 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	MMR1	Q06324	491 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	ATG17	Q06410	417 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	DNL4	Q08387	944 aa	Predicted RBP	4.91	□□□□□ -1.62
TFB3	YDR460W	OSH2	Q12451	1283 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	APC1	P53886	1748 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	YIL177C	P40434	1758 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	YJL225C	P40889	1758 aa		4.91	□□□□□ -1.62
TFB3	YDR460W	AI1	P03875	834 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	RPL22A	P05749	121 aa	Known RBP	4.9	□□□□□ -1.63
TFB3	YDR460W	ADE3	P07245	946 aa	Known RBP	4.9	□□□□□ -1.63
TFB3	YDR460W	HMG1	P12683	1054 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	NMT1	P14743	455 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	SEN2	P16658	377 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	ITR2	P30606	609 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	PET112	P33893	541 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	RFC5	P38251	354 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	RGD1	P38339	666 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	YLF2	P38746	405 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	PAN5	P38787	379 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	PEX28	P38848	579 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	LAM1	P38851	1228 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	NUP60	P39705	539 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	NOC2	P39744	710 aa	Known RBP	4.9	□□□□□ -1.63
TFB3	YDR460W	SDS3	P40505	327 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	YIR042C	P40586	236 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	XKS1	P42826	600 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	NPA3	P47122	385 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	CIK1	Q01649	594 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	SPO71	Q03868	1245 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	YDR338C	Q05497	695 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	MSH5	Q12175	901 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	YRM1	Q12340	786 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	DDP1	Q99321	188 aa	Known RBP	4.9	□□□□□ -1.63
TFB3	YDR460W	SSK22	P25390	1331 aa	Predicted RBP	4.9	□□□□□ -1.63
TFB3	YDR460W	PDR18	P53756	1333 aa		4.9	□□□□□ -1.63
TFB3	YDR460W	CDC31	P06704	161 aa	Known RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	SSC1	P0CS90	654 aa	Known RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	LOS1	P33418	1100 aa	Predicted RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	MNR2	P35724	969 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	YKL077W	P36081	392 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	YKR018C	P36114	725 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	ECM4	P36156	370 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	EXO5	P38289	585 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	YHB1	P39676	399 aa	Known RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	VID27	P40157	782 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	UTP18	P40362	594 aa	Predicted RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	APT1	P49435	187 aa	Known RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	ESF2	P53743	316 aa	Known RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	BNI5	P53890	448 aa	Known RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	SPP382	Q06411	708 aa	Predicted RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	YPR172W	Q06608	200 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	SYO1	Q07395	620 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	GPN2	Q08726	347 aa	Predicted RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	BUD7	Q08754	746 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	YIG1	Q08956	461 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	CLF1	Q12309	687 aa	Predicted RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	NOT5	Q12514	560 aa	Predicted RBP	4.89	□□□□□ -1.63
TFB3	YDR460W	TOM1	Q03280	3268 aa		4.89	□□□□□ -1.63
TFB3	YDR460W	CDC8	P00572	216 aa		4.88	□□□□□ -1.63
TFB3	YDR460W	RPL19A	P0CX82	189 aa	Known RBP	4.88	□□□□□ -1.63
TFB3	YDR460W	RPL19B	P0CX83	189 aa	Predicted RBP	4.88	□□□□□ -1.63
TFB3	YDR460W	MSS116	P15424	664 aa	Known RBP	4.88	□□□□□ -1.63
TFB3	YDR460W	SAC7	P17121	654 aa		4.88	□□□□□ -1.63
TFB3	YDR460W	CLN2	P20438	545 aa		4.88	□□□□□ -1.63
TFB3	YDR460W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
TFB3	YDR460W	ADE2	P21264	571 aa	Known RBP	4.88	□□□□□ -1.63
TFB3	YDR460W	SEC15	P22224	910 aa		4.88	□□□□□ -1.63
TFB3	YDR460W	YCR016W	P25617	290 aa	Known RBP	4.88	□□□□□ -1.63
TFB3	YDR460W	PDB1	P32473	366 aa	Known RBP	4.88	□□□□□ -1.63
TFB3	YDR460W	DID4	P36108	232 aa		4.88	□□□□□ -1.63
TFB3	YDR460W	DBP7	P36120	742 aa	Known RBP	4.88	□□□□□ -1.63
TFB3	YDR460W	YBR242W	P38331	238 aa		4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms