RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C YME1P32795 747 aa7.34□□□□□ -1.24
TDP1YBR223C LOS1P33418 1100 aaPredicted RBP7.34□□□□□ -1.24
TDP1YBR223C NCL1P38205 684 aaKnown RBP7.34□□□□□ -1.24
TDP1YBR223C SMX2P40204 77 aaKnown RBP7.34□□□□□ -1.24
TDP1YBR223C URB2P47108 1174 aa7.34□□□□□ -1.24
TDP1YBR223C YMR1P47147 688 aaKnown RBP RIP-Chip data7.34□□□□□ -1.24not detected
TDP1YBR223C PTA1Q01329 785 aaPredicted RBP7.34□□□□□ -1.24
TDP1YBR223C MTG1Q03151 367 aaPredicted RBP7.34□□□□□ -1.24
TDP1YBR223C USA1Q03714 838 aa7.34□□□□□ -1.24
TDP1YBR223C PIG1Q06216 648 aa7.34□□□□□ -1.24
TDP1YBR223C NOC3Q07896 663 aaPredicted RBP7.34□□□□□ -1.24
TDP1YBR223C SPO16P17122 198 aa7.33□□□□□ -1.24
TDP1YBR223C PLC1P32383 869 aa7.33□□□□□ -1.24
TDP1YBR223C CBF2P32504 956 aa7.33□□□□□ -1.24
TDP1YBR223C PIN4P34217 668 aaKnown RBP RIP-Chip data7.33□□□□□ -1.24not detected
TDP1YBR223C END3P39013 349 aa7.33□□□□□ -1.24
TDP1YBR223C MRX1P40050 688 aa7.33□□□□□ -1.24
TDP1YBR223C YTA12P40341 825 aa7.33□□□□□ -1.24
TDP1YBR223C TAM41P53230 385 aa7.33□□□□□ -1.24
TDP1YBR223C YGR111WP53265 400 aa7.33□□□□□ -1.24
TDP1YBR223C CEF1Q03654 590 aaPredicted RBP7.33□□□□□ -1.24
TDP1YBR223C YDR338CQ05497 695 aa7.33□□□□□ -1.24
TDP1YBR223C YCR051WP25631 222 aa7.32□□□□□ -1.24
TDP1YBR223C MCR1P36060 302 aaKnown RBP7.32□□□□□ -1.24
TDP1YBR223C PBP2P38151 413 aaKnown RBP RIP-Chip data7.32□□□□□ -1.24not detected
TDP1YBR223C MMS21P38632 267 aa7.32□□□□□ -1.24
TDP1YBR223C VPS53P47061 822 aa7.32□□□□□ -1.24
TDP1YBR223C VPS70P47161 811 aa7.32□□□□□ -1.24
TDP1YBR223C CTR1P49573 406 aa7.32□□□□□ -1.24
TDP1YBR223C RPL22BP56628 122 aaKnown RBP7.32□□□□□ -1.24
TDP1YBR223C ATG16Q03818 150 aa7.32□□□□□ -1.24
TDP1YBR223C YDR278CQ05612 105 aa7.32□□□□□ -1.24
TDP1YBR223C DUS3Q06053 668 aaKnown RBP7.32□□□□□ -1.24
TDP1YBR223C PUF3Q07807 879 aaKnown RBP RIP-Chip data7.32□□□□□ -1.24not detected
TDP1YBR223C SMC5Q08204 1093 aa7.32□□□□□ -1.24
TDP1YBR223C ACM1Q08981 209 aa7.32□□□□□ -1.24
TDP1YBR223C NCR1Q12200 1170 aa7.32□□□□□ -1.24
TDP1YBR223C FBP1P09201 348 aa7.31□□□□□ -1.24
TDP1YBR223C KAR3P17119 729 aa7.31□□□□□ -1.24
TDP1YBR223C VMA1P17255 1071 aaKnown RBP7.31□□□□□ -1.24
TDP1YBR223C DAL2P25335 343 aa7.31□□□□□ -1.24
TDP1YBR223C CDC11P32458 415 aa7.31□□□□□ -1.24
TDP1YBR223C EUG1P32474 517 aa7.31□□□□□ -1.24
TDP1YBR223C COT1P32798 439 aa7.31□□□□□ -1.24
TDP1YBR223C YBL055CP34220 418 aaPredicted RBP7.31□□□□□ -1.24
TDP1YBR223C SHP1P34223 423 aa7.31□□□□□ -1.24
TDP1YBR223C SLI15P38283 698 aa7.31□□□□□ -1.24
TDP1YBR223C AVT1P47082 602 aa7.31□□□□□ -1.24
TDP1YBR223C HSH155P49955 971 aaKnown RBP7.31□□□□□ -1.24
TDP1YBR223C TBF1Q02457 562 aa7.31□□□□□ -1.24
TDP1YBR223C RGA2Q06407 1009 aa7.31□□□□□ -1.24
TDP1YBR223C TAF10Q12030 206 aa7.31□□□□□ -1.24
TDP1YBR223C CSR2Q12734 1121 aa7.31□□□□□ -1.24
TDP1YBR223C VMA4P22203 233 aaKnown RBP7.3□□□□□ -1.24
TDP1YBR223C PER1P25625 357 aa7.3□□□□□ -1.24
TDP1YBR223C YKR018CP36114 725 aa7.3□□□□□ -1.24
TDP1YBR223C MRX3P38172 270 aa7.3□□□□□ -1.24
TDP1YBR223C VHC1P38329 1120 aa7.3□□□□□ -1.24
TDP1YBR223C MSG5P38590 489 aa7.3□□□□□ -1.24
TDP1YBR223C SSP1P38871 571 aa7.3□□□□□ -1.24
TDP1YBR223C YJL007CP47080 104 aa7.3□□□□□ -1.24
TDP1YBR223C UBP15P50101 1230 aa7.3□□□□□ -1.24
TDP1YBR223C FPK1P53739 893 aa7.3□□□□□ -1.24
TDP1YBR223C SQS1P53866 767 aaKnown RBP7.3□□□□□ -1.24
TDP1YBR223C UBX5Q06682 500 aa7.3□□□□□ -1.24
TDP1YBR223C CDC53Q12018 815 aaKnown RBP7.3□□□□□ -1.24
TDP1YBR223C NCA2Q12374 616 aa7.3□□□□□ -1.24
TDP1YBR223C PMR1P13586 950 aa7.3□□□□□ -1.24
TDP1YBR223C SRV2P17555 526 aaKnown RBP7.3□□□□□ -1.24
TDP1YBR223C CAP1P28495 268 aaKnown RBP7.3□□□□□ -1.24
TDP1YBR223C SWI3P32591 825 aa7.3□□□□□ -1.24
TDP1YBR223C OCT1P35999 772 aa7.3□□□□□ -1.24
TDP1YBR223C CCL1P37366 393 aa7.3□□□□□ -1.24
TDP1YBR223C NPP2P39997 493 aa7.3□□□□□ -1.24
TDP1YBR223C ATG1P53104 897 aa7.3□□□□□ -1.24
TDP1YBR223C RTT102P53330 157 aa7.3□□□□□ -1.24
TDP1YBR223C YNL035CP53962 389 aaKnown RBP7.3□□□□□ -1.24
TDP1YBR223C ADA2Q02336 434 aa7.3□□□□□ -1.24
TDP1YBR223C YDR222WQ04925 415 aa7.3□□□□□ -1.24
TDP1YBR223C FAR8Q05040 523 aa7.3□□□□□ -1.24
TDP1YBR223C DUS4Q06063 367 aa7.3□□□□□ -1.24
TDP1YBR223C ISA1Q07821 250 aaPredicted RBP7.3□□□□□ -1.24
TDP1YBR223C ARD1P07347 238 aaPredicted RBP7.29□□□□□ -1.24
TDP1YBR223C PEP5P12868 1029 aa7.29□□□□□ -1.24
TDP1YBR223C PMS1P14242 873 aa7.29□□□□□ -1.24
TDP1YBR223C ARG1P22768 420 aa7.29□□□□□ -1.24
TDP1YBR223C GPI10P30777 616 aa7.29□□□□□ -1.24
TDP1YBR223C CSG2P35206 410 aa7.29□□□□□ -1.24
TDP1YBR223C CPR7P47103 393 aa7.29□□□□□ -1.24
TDP1YBR223C DRN1P53255 507 aaKnown RBP7.29□□□□□ -1.24
TDP1YBR223C RPA49Q01080 415 aaPredicted RBP7.29□□□□□ -1.24
TDP1YBR223C SHR3Q02774 210 aa7.29□□□□□ -1.24
TDP1YBR223C TAF9Q05027 157 aa7.29□□□□□ -1.24
TDP1YBR223C IWR1Q07532 353 aaPredicted RBP7.29□□□□□ -1.24
TDP1YBR223C OSW2Q12202 724 aa7.29□□□□□ -1.24
TDP1YBR223C PUF4P25339 888 aaKnown RBP RIP-Chip data7.28□□□□□ -1.24not detected
TDP1YBR223C PSE1P32337 1089 aaKnown RBP7.28□□□□□ -1.24
TDP1YBR223C UTR4P32626 227 aa7.28□□□□□ -1.24
TDP1YBR223C HMF1P40037 129 aaKnown RBP7.28□□□□□ -1.24
TDP1YBR223C YMR134WP40207 237 aa7.28□□□□□ -1.24
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms