RNA–Protein interactions for RNA: snR50

snR50, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR50, Length 90 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR50	snR50	ENP2	P48234	707 aa	Known RBP	0.69	□□□□□ -2.3
snR50	snR50	HSV2	P50079	448 aa	Predicted RBP	0.69	□□□□□ -2.3
snR50	snR50	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	0.69	□□□□□ -2.3	not detected
snR50	snR50	CRR1	Q05790	422 aa		0.69	□□□□□ -2.3
snR50	snR50	NUT2	Q06213	157 aa		0.69	□□□□□ -2.3
snR50	snR50	FRT1	Q99332	602 aa		0.69	□□□□□ -2.3
snR50	snR50	SIR3	P06701	978 aa		0.68	□□□□□ -2.3
snR50	snR50	ERG11	P10614	530 aa		0.68	□□□□□ -2.3
snR50	snR50	LAT1	P12695	482 aa	Known RBP	0.68	□□□□□ -2.3
snR50	snR50	MBR1	P23493	339 aa		0.68	□□□□□ -2.3
snR50	snR50	PEX6	P33760	1030 aa		0.68	□□□□□ -2.3
snR50	snR50	SAP190	P36123	1033 aa		0.68	□□□□□ -2.3
snR50	snR50	GLG1	P36143	616 aa		0.68	□□□□□ -2.3
snR50	snR50	YKR078W	P36158	585 aa	Known RBP	0.68	□□□□□ -2.3
snR50	snR50	YBR238C	P38330	731 aa	Known RBP	0.68	□□□□□ -2.3
snR50	snR50	CBR1	P38626	284 aa	Known RBP	0.68	□□□□□ -2.3
snR50	snR50	RPP1	P38786	293 aa		0.68	□□□□□ -2.3
snR50	snR50	SPC97	P38863	823 aa		0.68	□□□□□ -2.3
snR50	snR50	ARG2	P40360	574 aa		0.68	□□□□□ -2.3
snR50	snR50	NDC80	P40460	691 aa		0.68	□□□□□ -2.3
snR50	snR50	FKH2	P41813	862 aa		0.68	□□□□□ -2.3
snR50	snR50	PSA1	P41940	361 aa	Known RBP	0.68	□□□□□ -2.3
snR50	snR50	RAI1	P53063	387 aa	Known RBP	0.68	□□□□□ -2.3
snR50	snR50	STP1	Q00947	519 aa		0.68	□□□□□ -2.3
snR50	snR50	HRQ1	Q05549	1077 aa		0.68	□□□□□ -2.3
snR50	snR50	SPP382	Q06411	708 aa	Predicted RBP	0.68	□□□□□ -2.3
snR50	snR50	SWM1	Q12379	170 aa		0.68	□□□□□ -2.3
snR50	snR50	ATG11	Q12527	1178 aa		0.68	□□□□□ -2.3
snR50	snR50	PRE9	P23638	258 aa	Known RBP	0.67	□□□□□ -2.3
snR50	snR50	EUG1	P32474	517 aa		0.67	□□□□□ -2.3
snR50	snR50	GCS1	P35197	352 aa		0.67	□□□□□ -2.3
snR50	snR50	MUP3	P38734	546 aa		0.67	□□□□□ -2.3
snR50	snR50	FAA3	P39002	694 aa		0.67	□□□□□ -2.3
snR50	snR50	CCT5	P40413	562 aa	Known RBP	0.67	□□□□□ -2.3
snR50	snR50	MRPS18	P42847	217 aa		0.67	□□□□□ -2.3
snR50	snR50	GYP7	P48365	746 aa		0.67	□□□□□ -2.3
snR50	snR50	CTR1	P49573	406 aa		0.67	□□□□□ -2.3
snR50	snR50	LSC1	P53598	329 aa	Known RBP	0.67	□□□□□ -2.3
snR50	snR50	NUP53	Q03790	475 aa		0.67	□□□□□ -2.3
snR50	snR50	TIF35	Q04067	274 aa	Known RBP	0.67	□□□□□ -2.3
snR50	snR50	TOS4	Q06266	489 aa		0.67	□□□□□ -2.3
snR50	snR50	IRC13	Q08630	104 aa		0.67	□□□□□ -2.3
snR50	snR50	NDD1	Q08887	554 aa		0.67	□□□□□ -2.3
snR50	snR50	MLH3	Q12083	715 aa		0.67	□□□□□ -2.3
snR50	snR50	PHR1	P05066	565 aa	Known RBP RIP-Chip data	0.66	□□□□□ -2.3	not detected
snR50	snR50	NUP1	P20676	1076 aa		0.66	□□□□□ -2.3
snR50	snR50	NGG1	P32494	702 aa		0.66	□□□□□ -2.3
snR50	snR50	ECM32	P32644	1121 aa	Known RBP	0.66	□□□□□ -2.3
snR50	snR50	STE13	P33894	931 aa		0.66	□□□□□ -2.3
snR50	snR50	RER2	P35196	286 aa		0.66	□□□□□ -2.3
snR50	snR50	GRS1	P38088	690 aa	Known RBP	0.66	□□□□□ -2.3
snR50	snR50	MCM7	P38132	845 aa		0.66	□□□□□ -2.3
snR50	snR50	UBS1	P38290	277 aa		0.66	□□□□□ -2.3
snR50	snR50	TSL1	P38427	1098 aa	Known RBP	0.66	□□□□□ -2.3
snR50	snR50	BCD1	P38772	366 aa		0.66	□□□□□ -2.3
snR50	snR50	YAT2	P40017	923 aa		0.66	□□□□□ -2.3
snR50	snR50	UBC9	P50623	157 aa	Predicted RBP	0.66	□□□□□ -2.3
snR50	snR50	UBC11	P52492	156 aa		0.66	□□□□□ -2.3
snR50	snR50	YKE2	P52553	114 aa		0.66	□□□□□ -2.3
snR50	snR50	ATG4	P53867	494 aa		0.66	□□□□□ -2.3
snR50	snR50	YTH1	Q06102	208 aa	Predicted RBP	0.66	□□□□□ -2.3
snR50	snR50	RKM4	Q12504	494 aa		0.66	□□□□□ -2.3
snR50	snR50	PHO2	P07269	559 aa		0.65	□□□□□ -2.31
snR50	snR50	MPH2	P0CD99	609 aa		0.65	□□□□□ -2.31
snR50	snR50	PYC1	P11154	1178 aa	Known RBP	0.65	□□□□□ -2.31
snR50	snR50	CDC12	P32468	407 aa	Known RBP	0.65	□□□□□ -2.31
snR50	snR50	HIR1	P32479	840 aa		0.65	□□□□□ -2.31
snR50	snR50	SPC29	P33419	253 aa		0.65	□□□□□ -2.31
snR50	snR50	ASK1	P35734	292 aa		0.65	□□□□□ -2.31
snR50	snR50	GGA2	P38817	585 aa	Known RBP	0.65	□□□□□ -2.31
snR50	snR50	ERP5	P38819	212 aa		0.65	□□□□□ -2.31
snR50	snR50	DUN1	P39009	513 aa		0.65	□□□□□ -2.31
snR50	snR50	SNF7	P39929	240 aa	Known RBP	0.65	□□□□□ -2.31
snR50	snR50	NPP2	P39997	493 aa		0.65	□□□□□ -2.31
snR50	snR50	HOS4	P40480	1083 aa		0.65	□□□□□ -2.31
snR50	snR50	PCI8	P40512	444 aa		0.65	□□□□□ -2.31
snR50	snR50	BAP3	P41815	604 aa		0.65	□□□□□ -2.31
snR50	snR50	YGR122W	P53272	402 aa		0.65	□□□□□ -2.31
snR50	snR50	ASI2	P53895	289 aa		0.65	□□□□□ -2.31
snR50	snR50	SFB2	P53953	876 aa		0.65	□□□□□ -2.31
snR50	snR50	VPS30	Q02948	557 aa		0.65	□□□□□ -2.31
snR50	snR50	EAF1	Q06337	982 aa		0.65	□□□□□ -2.31
snR50	snR50	ADE5,7	P07244	802 aa	Known RBP	0.64	□□□□□ -2.31
snR50	snR50	PRP4	P20053	465 aa	Known RBP	0.64	□□□□□ -2.31
snR50	snR50	RAD27	P26793	382 aa		0.64	□□□□□ -2.31
snR50	snR50	HIS7	P33734	552 aa	Known RBP	0.64	□□□□□ -2.31
snR50	snR50	PPX1	P38698	397 aa		0.64	□□□□□ -2.31
snR50	snR50	YHR078W	P38799	552 aa		0.64	□□□□□ -2.31
snR50	snR50	REV7	P38927	245 aa		0.64	□□□□□ -2.31
snR50	snR50	SCW4	P53334	386 aa	Known RBP	0.64	□□□□□ -2.31
snR50	snR50	SRP1	Q02821	542 aa	Known RBP	0.64	□□□□□ -2.31
snR50	snR50	NRG1	Q03125	231 aa		0.64	□□□□□ -2.31
snR50	snR50	SSL1	Q04673	461 aa	Predicted RBP	0.64	□□□□□ -2.31
snR50	snR50	ASM4	Q05166	528 aa		0.64	□□□□□ -2.31
snR50	snR50	MRL1	Q06815	381 aa		0.64	□□□□□ -2.31
snR50	snR50	TMA46	Q12000	345 aa	Known RBP	0.64	□□□□□ -2.31
snR50	snR50	YLR415C	O13578	112 aa		0.63	□□□□□ -2.31
snR50	snR50	NOT3	P06102	836 aa	Known RBP	0.63	□□□□□ -2.31
snR50	snR50	GCR1	P07261	785 aa		0.63	□□□□□ -2.31
snR50	snR50	SAT4	P25333	603 aa	Known RBP	0.63	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms