Protein–RNA interactions for Protein: P53867

ATG4, Cysteine protease ATG4, yeastyeast

Predictions only

Length 494 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
ATG4P53867 YML009W-BYML009W-B 477 nt18.53■□□□□ 0.56
ATG4P53867 NSR1YGR159C 1245 nt18.2■□□□□ 0.5
ATG4P53867 NOP1YDL014W 984 nt18.08■□□□□ 0.48
ATG4P53867 YKL036CYKL036C 393 nt16.9■□□□□ 0.3
ATG4P53867 MDJ1YFL016C 1536 nt15.99■□□□□ 0.15
ATG4P53867 Q0297Q0297 156 nt15.91■□□□□ 0.14
ATG4P53867 YJL027CYJL027C 417 nt15.82■□□□□ 0.12
ATG4P53867 SRX1YKL086W 384 nt15.81■□□□□ 0.12
ATG4P53867 SCS3YGL126W 1143 nt15.51■□□□□ 0.07
ATG4P53867 YCR051WYCR051W 669 nt15.02■□□□□ -0
ATG4P53867 YOL085CYOL085C 342 nt14.63□□□□□ -0.07
ATG4P53867 PKP1YIL042C 1185 nt14.39□□□□□ -0.11
ATG4P53867 RPP1BYDL130W 321 nt14.28□□□□□ -0.12
ATG4P53867 DBP2YNL112W 1641 nt14.23□□□□□ -0.13
ATG4P53867 TRN1tP(UGG)A 72 nt14.18□□□□□ -0.14
ATG4P53867 SUF9tP(UGG)F 72 nt14.18□□□□□ -0.14
ATG4P53867 SUF8tP(UGG)H 72 nt14.18□□□□□ -0.14
ATG4P53867 tP(UGG)LtP(UGG)L 72 nt14.18□□□□□ -0.14
ATG4P53867 SUF7tP(UGG)M 72 nt14.18□□□□□ -0.14
ATG4P53867 tP(UGG)N1tP(UGG)N1 72 nt14.18□□□□□ -0.14
ATG4P53867 tP(UGG)N2tP(UGG)N2 72 nt14.18□□□□□ -0.14
ATG4P53867 tP(UGG)O1tP(UGG)O1 72 nt14.18□□□□□ -0.14
ATG4P53867 SUF11tP(UGG)O2 72 nt14.18□□□□□ -0.14
ATG4P53867 CCC1YLR220W 969 nt14.03□□□□□ -0.16
ATG4P53867 SCJ1YMR214W 1134 nt13.99□□□□□ -0.17
ATG4P53867 ATS1YAL020C 1002 nt13.92□□□□□ -0.18
ATG4P53867 PET122YER153C 765 nt13.63□□□□□ -0.23
ATG4P53867 YBR190WYBR190W 312 nt13.55□□□□□ -0.24
ATG4P53867 SCR1SCR1 522 nt13.53□□□□□ -0.24
ATG4P53867 tP(UGG)O3tP(UGG)O3 72 nt13.48□□□□□ -0.25
ATG4P53867 RVS167YDR388W 1449 nt13.42□□□□□ -0.26
ATG4P53867 RTC3YHR087W 336 nt13.27□□□□□ -0.29
ATG4P53867 RRN5YLR141W 1092 nt13.24□□□□□ -0.29
ATG4P53867 RSB1YOR049C 1065 nt13.04□□□□□ -0.32
ATG4P53867 YDJ1YNL064C 1230 nt13.03□□□□□ -0.32
ATG4P53867 SHR5YOL110W 714 nt13.01□□□□□ -0.33
ATG4P53867 YER088W-BYER088W-B 147 nt12.99□□□□□ -0.33
ATG4P53867 PST2YDR032C 597 nt12.85□□□□□ -0.35
ATG4P53867 GAR1YHR089C 618 nt12.71□□□□□ -0.37
ATG4P53867 DEP1YAL013W 1218 nt12.57□□□□□ -0.4
ATG4P53867 URN1YPR152C 1398 nt12.51□□□□□ -0.41
ATG4P53867 YKL097CYKL097C 411 nt12.46□□□□□ -0.41
ATG4P53867 YNL208WYNL208W 600 nt12.39□□□□□ -0.43
ATG4P53867 RPN10YHR200W 807 nt12.36□□□□□ -0.43
ATG4P53867 SHU1YHL006C 453 nt12.29□□□□□ -0.44
ATG4P53867 TIR1YER011W 765 nt12.27□□□□□ -0.45
ATG4P53867 OPI9YLR338W 858 nt12.27□□□□□ -0.45
ATG4P53867 SAH1YER043C 1350 nt12.15□□□□□ -0.46
ATG4P53867 PUT4YOR348C 1884 nt12.14□□□□□ -0.47
ATG4P53867 SSA1YAL005C 1929 nt12.09□□□□□ -0.47
ATG4P53867 SSA3YBL075C 1950 nt12.09□□□□□ -0.47
ATG4P53867 YAL037C-BYAL037C-B 975 nt12.03□□□□□ -0.48
ATG4P53867 ARE1YCR048W 1833 nt12□□□□□ -0.49
ATG4P53867 SRB2YHR041C 633 nt11.94□□□□□ -0.5
ATG4P53867 YJR018WYJR018W 363 nt11.94□□□□□ -0.5
ATG4P53867 YOR139CYOR139C 393 nt11.93□□□□□ -0.5
ATG4P53867 PUN1YLR414C 792 nt11.92□□□□□ -0.5
ATG4P53867 YHR049C-AYHR049C-A 297 nt11.85□□□□□ -0.51
ATG4P53867 YJR120WYJR120W 351 nt11.82□□□□□ -0.52
ATG4P53867 NPL3YDR432W 1245 nt11.78□□□□□ -0.52
ATG4P53867 WWM1YFL010C 636 nt11.78□□□□□ -0.52
ATG4P53867 YGR021WYGR021W 873 nt11.77□□□□□ -0.53
ATG4P53867 POA1YBR022W 534 nt11.77□□□□□ -0.53
ATG4P53867 RPP2BYDR382W 333 nt11.75□□□□□ -0.53
ATG4P53867 HOM6YJR139C 1080 nt11.75□□□□□ -0.53
ATG4P53867 MNP1YGL068W 585 nt11.74□□□□□ -0.53
ATG4P53867 PTC2YER089C 1395 nt11.74□□□□□ -0.53
ATG4P53867 YOL037CYOL037C 354 nt11.62□□□□□ -0.55
ATG4P53867 BUD23YCR047C 828 nt11.58□□□□□ -0.56
ATG4P53867 YFL021C-AYFL021C-A 855 nt11.58□□□□□ -0.56
ATG4P53867 RKM5YLR137W 1104 nt11.58□□□□□ -0.56
ATG4P53867 BDH2YAL061W 1254 nt11.57□□□□□ -0.56
ATG4P53867 NAB2YGL122C 1578 nt11.55□□□□□ -0.56
ATG4P53867 BSC6YOL137W 1494 nt11.49□□□□□ -0.57
ATG4P53867 INM2YDR287W 879 nt11.47□□□□□ -0.57
ATG4P53867 DAL1YIR027C 1383 nt11.45□□□□□ -0.58
ATG4P53867 tM(CAU)CtM(CAU)C 72 nt11.44□□□□□ -0.58
ATG4P53867 IMT4tM(CAU)E 72 nt11.44□□□□□ -0.58
ATG4P53867 IMT3tM(CAU)J3 72 nt11.44□□□□□ -0.58
ATG4P53867 IMT1tM(CAU)O1 72 nt11.44□□□□□ -0.58
ATG4P53867 IMT2tM(CAU)P 72 nt11.44□□□□□ -0.58
ATG4P53867 FIS1YIL065C 468 nt11.44□□□□□ -0.58
ATG4P53867 LSM3YLR438C-A 270 nt11.44□□□□□ -0.58
ATG4P53867 FPR4YLR449W 1179 nt11.43□□□□□ -0.58
ATG4P53867 Q0182Q0182 405 nt11.42□□□□□ -0.58
ATG4P53867 YBL100CYBL100C 315 nt11.42□□□□□ -0.58
ATG4P53867 PHO4YFR034C 939 nt11.35□□□□□ -0.59
ATG4P53867 YLR281CYLR281C 468 nt11.33□□□□□ -0.6
ATG4P53867 TRM9YML014W 840 nt11.3□□□□□ -0.6
ATG4P53867 FUN26YAL022C 1554 nt11.29□□□□□ -0.6
ATG4P53867 PUS2YGL063W 1113 nt11.29□□□□□ -0.6
ATG4P53867 WHI5YOR083W 888 nt11.26□□□□□ -0.61
ATG4P53867 CCT6YDR188W 1641 nt11.19□□□□□ -0.62
ATG4P53867 MOT3YMR070W 1473 nt11.1□□□□□ -0.63
ATG4P53867 YLR154C-GYLR154C-G 150 nt11.08□□□□□ -0.64
ATG4P53867 ALF1YNL148C 765 nt11.08□□□□□ -0.64
ATG4P53867 SUF2tP(AGG)C 72 nt11.06□□□□□ -0.64
ATG4P53867 SUF10tP(AGG)N 72 nt11.06□□□□□ -0.64
ATG4P53867 DSK2YMR276W 1122 nt11.05□□□□□ -0.64
ATG4P53867 YPS1YLR120C 1710 nt11.04□□□□□ -0.64
Retrieved 100 of 7,029 protein–RNA pairs in 13.5 ms