RNA–Protein interactions for RNA: YOR035C

SHE4, Transcript of Protein containing a UCS (UNC-45/CRO1/SHE4) domain, yeast

Gene SHE4, Length 2,370 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE4	YOR035C	TAF8	Q03750	510 aa		4.12	□□□□□ -1.75
SHE4	YOR035C	LCD1	Q04377	747 aa		4.12	□□□□□ -1.75
SHE4	YOR035C	TOM70	P07213	617 aa	Known RBP	4.11	□□□□□ -1.75
SHE4	YOR035C	MSD1	P15179	658 aa	Known RBP	4.11	□□□□□ -1.75
SHE4	YOR035C	TSL1	P38427	1098 aa	Known RBP	4.11	□□□□□ -1.75
SHE4	YOR035C	RPN4	Q03465	531 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	CAN1	P04817	590 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	TOP3	P13099	656 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	SRM1	P21827	482 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	CDC48	P25694	835 aa	Known RBP	4.11	□□□□□ -1.75
SHE4	YOR035C	SRP101	P32916	621 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	DOM34	P33309	386 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	LAM1	P38851	1228 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	ZRG8	P40021	1076 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	TOK1	P40310	691 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	FPR4	Q06205	392 aa	Predicted RBP	4.11	□□□□□ -1.75
SHE4	YOR035C	CDA2	Q06703	312 aa		4.11	□□□□□ -1.75
SHE4	YOR035C	AFR1	P33304	620 aa		4.1	□□□□□ -1.75
SHE4	YOR035C	YKR078W	P36158	585 aa	Known RBP	4.1	□□□□□ -1.75
SHE4	YOR035C	ECM21	P38167	1117 aa	Known RBP	4.1	□□□□□ -1.75
SHE4	YOR035C	AIM3	P38266	947 aa	Known RBP	4.1	□□□□□ -1.75
SHE4	YOR035C	CCM1	P48237	864 aa	Predicted RBP	4.1	□□□□□ -1.75
SHE4	YOR035C	GTF1	P53260	183 aa	Predicted RBP	4.1	□□□□□ -1.75
SHE4	YOR035C	RNQ1	P25367	405 aa		4.1	□□□□□ -1.75
SHE4	YOR035C	PET10	P36139	283 aa		4.1	□□□□□ -1.75
SHE4	YOR035C	NIT1	P40447	199 aa		4.1	□□□□□ -1.75
SHE4	YOR035C	RTA1	P53047	317 aa		4.1	□□□□□ -1.75
SHE4	YOR035C	PLB2	Q03674	706 aa		4.1	□□□□□ -1.75
SHE4	YOR035C	RPC82	P32349	654 aa		4.09	□□□□□ -1.75
SHE4	YOR035C	REC104	P33323	182 aa		4.09	□□□□□ -1.75
SHE4	YOR035C	BET3	P36149	193 aa		4.09	□□□□□ -1.75
SHE4	YOR035C	CHZ1	P40019	153 aa	Predicted RBP	4.09	□□□□□ -1.75
SHE4	YOR035C	SPT20	P50875	604 aa		4.09	□□□□□ -1.75
SHE4	YOR035C	PBP1	P53297	722 aa	Known RBP	4.09	□□□□□ -1.75
SHE4	YOR035C	PPM2	Q08282	695 aa		4.09	□□□□□ -1.75
SHE4	YOR035C	TIM23	P32897	222 aa		4.09	□□□□□ -1.76
SHE4	YOR035C	TSA1	P34760	196 aa	Known RBP	4.09	□□□□□ -1.76
SHE4	YOR035C	MEF2	P39677	819 aa		4.09	□□□□□ -1.76
SHE4	YOR035C	MND2	P40577	368 aa		4.09	□□□□□ -1.76
SHE4	YOR035C	OSW7	P43611	510 aa		4.09	□□□□□ -1.76
SHE4	YOR035C	YGR012W	P53206	393 aa		4.09	□□□□□ -1.76
SHE4	YOR035C	ORC1	P54784	914 aa	Predicted RBP	4.09	□□□□□ -1.76
SHE4	YOR035C	ERR1	P0CX10	437 aa		4.08	□□□□□ -1.76
SHE4	YOR035C	ERR2	P0CX11	437 aa		4.08	□□□□□ -1.76
SHE4	YOR035C	HSF1	P10961	833 aa		4.08	□□□□□ -1.76
SHE4	YOR035C	ELM1	P32801	640 aa		4.08	□□□□□ -1.76
SHE4	YOR035C	NUP82	P40368	713 aa		4.08	□□□□□ -1.76
SHE4	YOR035C	UBP6	P43593	499 aa	Known RBP	4.08	□□□□□ -1.76
SHE4	YOR035C	YPL277C	Q08989	487 aa		4.08	□□□□□ -1.76
SHE4	YOR035C	RPS13	P05756	151 aa	Known RBP	4.07	□□□□□ -1.76
SHE4	YOR035C	CIT2	P08679	460 aa		4.07	□□□□□ -1.76
SHE4	YOR035C	POA1	P38218	177 aa		4.07	□□□□□ -1.76
SHE4	YOR035C	PSP2	P50109	593 aa	Known RBP	4.07	□□□□□ -1.76
SHE4	YOR035C	RIM8	P53179	542 aa		4.07	□□□□□ -1.76
SHE4	YOR035C	GCN5	Q03330	439 aa		4.07	□□□□□ -1.76
SHE4	YOR035C	BUL2	Q03758	920 aa	Known RBP	4.07	□□□□□ -1.76
SHE4	YOR035C	CDA1	Q06702	301 aa		4.07	□□□□□ -1.76
SHE4	YOR035C	NOT3	P06102	836 aa	Known RBP	4.07	□□□□□ -1.76
SHE4	YOR035C	RFA1	P22336	621 aa	Known RBP	4.07	□□□□□ -1.76
SHE4	YOR035C	BUD6	P41697	788 aa		4.07	□□□□□ -1.76
SHE4	YOR035C	RXT3	Q07458	294 aa		4.07	□□□□□ -1.76
SHE4	YOR035C	TPO1	Q07824	586 aa		4.07	□□□□□ -1.76
SHE4	YOR035C	GPB1	Q08886	897 aa		4.07	□□□□□ -1.76
SHE4	YOR035C	YBR238C	P38330	731 aa	Known RBP	4.06	□□□□□ -1.76
SHE4	YOR035C	GCV2	P49095	1034 aa		4.06	□□□□□ -1.76
SHE4	YOR035C	VPS30	Q02948	557 aa		4.06	□□□□□ -1.76
SHE4	YOR035C	YDR132C	Q03900	495 aa		4.06	□□□□□ -1.76
SHE4	YOR035C	PHO8	P11491	566 aa		4.06	□□□□□ -1.76
SHE4	YOR035C	TOD6	P34219	525 aa		4.06	□□□□□ -1.76
SHE4	YOR035C	YKE2	P52553	114 aa		4.06	□□□□□ -1.76
SHE4	YOR035C	RAI1	P53063	387 aa	Known RBP	4.06	□□□□□ -1.76
SHE4	YOR035C	SOD2	P00447	233 aa		4.05	□□□□□ -1.76
SHE4	YOR035C	SPE1	P08432	466 aa		4.05	□□□□□ -1.76
SHE4	YOR035C	EMC1	P25574	760 aa		4.05	□□□□□ -1.76
SHE4	YOR035C	YLR125W	Q12138	136 aa		4.05	□□□□□ -1.76
SHE4	YOR035C	PPG1	P32838	368 aa		4.05	□□□□□ -1.76
SHE4	YOR035C	IRC24	P40580	263 aa		4.05	□□□□□ -1.76
SHE4	YOR035C	ALG2	P43636	503 aa		4.05	□□□□□ -1.76
SHE4	YOR035C	NIT3	P49954	291 aa		4.05	□□□□□ -1.76
SHE4	YOR035C	DUS4	Q06063	367 aa		4.05	□□□□□ -1.76
SHE4	YOR035C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
SHE4	YOR035C	MPH2	P0CD99	609 aa		4.04	□□□□□ -1.76
SHE4	YOR035C	PRP6	P19735	899 aa	Predicted RBP	4.04	□□□□□ -1.76
SHE4	YOR035C	ACK1	Q07622	623 aa	Predicted RBP	4.04	□□□□□ -1.76
SHE4	YOR035C	ENV7	Q12003	364 aa		4.04	□□□□□ -1.76
SHE4	YOR035C	RPS9A	O13516	197 aa	Known RBP	4.04	□□□□□ -1.76
SHE4	YOR035C	RPP2A	P05319	106 aa	Known RBP	4.04	□□□□□ -1.76
SHE4	YOR035C	THI4	P32318	326 aa		4.04	□□□□□ -1.76
SHE4	YOR035C	HSV2	P50079	448 aa	Predicted RBP	4.04	□□□□□ -1.76
SHE4	YOR035C	YAP6	Q03935	383 aa		4.04	□□□□□ -1.76
SHE4	YOR035C	ADY3	Q07732	790 aa		4.04	□□□□□ -1.76
SHE4	YOR035C	CDC20	P26309	610 aa		4.03	□□□□□ -1.76
SHE4	YOR035C	STE13	P33894	931 aa		4.03	□□□□□ -1.76
SHE4	YOR035C	VPS62	P53285	467 aa		4.03	□□□□□ -1.76
SHE4	YOR035C	RNH70	P53331	553 aa		4.03	□□□□□ -1.76
SHE4	YOR035C	HMI1	Q12039	706 aa		4.03	□□□□□ -1.76
SHE4	YOR035C	EMC3	P36039	253 aa		4.03	□□□□□ -1.76
SHE4	YOR035C	GDH3	P39708	457 aa		4.03	□□□□□ -1.76
SHE4	YOR035C	CEP3	P40969	608 aa		4.03	□□□□□ -1.76
SHE4	YOR035C	CDC6	P09119	513 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms