RNA–Protein interactions for RNA: YOL080C

REX4, Transcript of Putative RNA exonuclease, yeast

Gene REX4, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
REX4	YOL080C	ERP6	P53198	216 aa		5.83	□□□□□ -1.48
REX4	YOL080C	UTP8	P53276	713 aa	Known RBP	5.83	□□□□□ -1.48
REX4	YOL080C	TPO2	P53283	614 aa		5.83	□□□□□ -1.48
REX4	YOL080C	YPR196W	Q06595	470 aa		5.83	□□□□□ -1.48
REX4	YOL080C	RXT3	Q07458	294 aa		5.83	□□□□□ -1.48
REX4	YOL080C	TPO1	Q07824	586 aa		5.83	□□□□□ -1.48
REX4	YOL080C	EMC1	P25574	760 aa		5.82	□□□□□ -1.48
REX4	YOL080C	CDC20	P26309	610 aa		5.82	□□□□□ -1.48
REX4	YOL080C	SIT1	P39980	628 aa		5.82	□□□□□ -1.48
REX4	YOL080C	YJL049W	P47048	450 aa		5.82	□□□□□ -1.48
REX4	YOL080C	HUL5	P53119	910 aa		5.82	□□□□□ -1.48
REX4	YOL080C	YGR012W	P53206	393 aa		5.82	□□□□□ -1.48
REX4	YOL080C	YGR125W	P53273	1036 aa		5.82	□□□□□ -1.48
REX4	YOL080C	YAP6	Q03935	383 aa		5.82	□□□□□ -1.48
REX4	YOL080C	CDA1	Q06702	301 aa		5.82	□□□□□ -1.48
REX4	YOL080C	ACK1	Q07622	623 aa	Predicted RBP	5.82	□□□□□ -1.48
REX4	YOL080C	HMI1	Q12039	706 aa		5.82	□□□□□ -1.48
REX4	YOL080C	YPR071W	Q12346	211 aa		5.82	□□□□□ -1.48
REX4	YOL080C	HSP60	P19882	572 aa	Known RBP	5.81	□□□□□ -1.48
REX4	YOL080C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	5.81	□□□□□ -1.48	not detected
REX4	YOL080C	FLR1	P38124	548 aa		5.81	□□□□□ -1.48
REX4	YOL080C	POA1	P38218	177 aa		5.81	□□□□□ -1.48
REX4	YOL080C	TAF1	P46677	1066 aa		5.81	□□□□□ -1.48
REX4	YOL080C	ESC8	Q08119	714 aa		5.81	□□□□□ -1.48
REX4	YOL080C	HBN1	Q96VH4	193 aa		5.81	□□□□□ -1.48
REX4	YOL080C	CIT1	P00890	479 aa		5.8	□□□□□ -1.48
REX4	YOL080C	YHR020W	P38708	688 aa	Known RBP	5.8	□□□□□ -1.48
REX4	YOL080C	IOC3	P43596	787 aa		5.8	□□□□□ -1.48
REX4	YOL080C	VPS62	P53285	467 aa		5.8	□□□□□ -1.48
REX4	YOL080C	BDF2	Q07442	638 aa		5.8	□□□□□ -1.48
REX4	YOL080C	ADY3	Q07732	790 aa		5.8	□□□□□ -1.48
REX4	YOL080C	YLR358C	O13565	187 aa		5.79	□□□□□ -1.48
REX4	YOL080C	HSF1	P10961	833 aa		5.79	□□□□□ -1.48
REX4	YOL080C	CDC48	P25694	835 aa	Known RBP	5.79	□□□□□ -1.48
REX4	YOL080C	CDC11	P32458	415 aa		5.79	□□□□□ -1.48
REX4	YOL080C	YKR078W	P36158	585 aa	Known RBP	5.79	□□□□□ -1.48
REX4	YOL080C	TOK1	P40310	691 aa		5.79	□□□□□ -1.48
REX4	YOL080C	BUL2	Q03758	920 aa	Known RBP	5.79	□□□□□ -1.48
REX4	YOL080C	FLC1	Q08967	793 aa		5.79	□□□□□ -1.48
REX4	YOL080C	CDC53	Q12018	815 aa	Known RBP	5.79	□□□□□ -1.48
REX4	YOL080C	TOP3	P13099	656 aa		5.78	□□□□□ -1.48
REX4	YOL080C	MSD1	P15179	658 aa	Known RBP	5.78	□□□□□ -1.48
REX4	YOL080C	DOM34	P33309	386 aa		5.78	□□□□□ -1.48
REX4	YOL080C	MET12	P46151	657 aa		5.78	□□□□□ -1.48
REX4	YOL080C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	5.78	□□□□□ -1.48	RIP-Chip
REX4	YOL080C	LCD1	Q04377	747 aa		5.78	□□□□□ -1.48
REX4	YOL080C	NSE3	Q05541	303 aa		5.78	□□□□□ -1.48
REX4	YOL080C	YOL098C	Q12496	1037 aa		5.78	□□□□□ -1.48
REX4	YOL080C	SPE1	P08432	466 aa		5.77	□□□□□ -1.49
REX4	YOL080C	YKE2	P52553	114 aa		5.77	□□□□□ -1.49
REX4	YOL080C	TMA10	Q06177	86 aa		5.77	□□□□□ -1.49
REX4	YOL080C	NOT3	P06102	836 aa	Known RBP	5.76	□□□□□ -1.49
REX4	YOL080C	RPC82	P32349	654 aa		5.76	□□□□□ -1.49
REX4	YOL080C	LST4	P34239	828 aa		5.76	□□□□□ -1.49
REX4	YOL080C	RSP5	P39940	809 aa	Known RBP	5.76	□□□□□ -1.49
REX4	YOL080C	CCM1	P48237	864 aa	Predicted RBP	5.76	□□□□□ -1.49
REX4	YOL080C	CLU1	Q03690	1277 aa	Known RBP	5.76	□□□□□ -1.49
REX4	YOL080C	TAF8	Q03750	510 aa		5.76	□□□□□ -1.49
REX4	YOL080C	YLR224W	Q05947	369 aa		5.76	□□□□□ -1.49
REX4	YOL080C	WHI4	Q07655	649 aa	Known RBP	5.76	□□□□□ -1.49
REX4	YOL080C	HIS5	P07172	385 aa		5.75	□□□□□ -1.49
REX4	YOL080C	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.75	□□□□□ -1.49	not detected
REX4	YOL080C	REC104	P33323	182 aa		5.75	□□□□□ -1.49
REX4	YOL080C	YKL222C	P35995	705 aa		5.75	□□□□□ -1.49
REX4	YOL080C	PET10	P36139	283 aa		5.75	□□□□□ -1.49
REX4	YOL080C	YBR238C	P38330	731 aa	Known RBP	5.75	□□□□□ -1.49
REX4	YOL080C	OCA5	P38738	679 aa		5.75	□□□□□ -1.49
REX4	YOL080C	GIP4	P39732	760 aa		5.75	□□□□□ -1.49
REX4	YOL080C	HUL4	P40985	892 aa		5.75	□□□□□ -1.49
REX4	YOL080C	PSP2	P50109	593 aa	Known RBP	5.75	□□□□□ -1.49
REX4	YOL080C	RAI1	P53063	387 aa	Known RBP	5.75	□□□□□ -1.49
REX4	YOL080C	YDL124W	Q07551	312 aa	Known RBP	5.75	□□□□□ -1.49
REX4	YOL080C	NOP12	Q08208	459 aa	Known RBP	5.75	□□□□□ -1.49
REX4	YOL080C	YCR015C	P25616	317 aa		5.74	□□□□□ -1.49
REX4	YOL080C	SRP40	P32583	406 aa	Predicted RBP	5.74	□□□□□ -1.49
REX4	YOL080C	BET3	P36149	193 aa		5.74	□□□□□ -1.49
REX4	YOL080C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.74	□□□□□ -1.49	not detected
REX4	YOL080C	PLB1	P39105	664 aa		5.74	□□□□□ -1.49
REX4	YOL080C	RTA1	P53047	317 aa		5.73	□□□□□ -1.49
REX4	YOL080C	CAN1	P04817	590 aa		5.72	□□□□□ -1.49
REX4	YOL080C	TOM70	P07213	617 aa	Known RBP	5.72	□□□□□ -1.49
REX4	YOL080C	RFA1	P22336	621 aa	Known RBP	5.72	□□□□□ -1.49
REX4	YOL080C	CTS1	P29029	562 aa		5.72	□□□□□ -1.49
REX4	YOL080C	RPD3	P32561	433 aa		5.72	□□□□□ -1.49
REX4	YOL080C	SHM2	P37291	469 aa	Known RBP	5.72	□□□□□ -1.49
REX4	YOL080C	UBP6	P43593	499 aa	Known RBP	5.72	□□□□□ -1.49
REX4	YOL080C	CHA4	P43634	648 aa		5.72	□□□□□ -1.49
REX4	YOL080C	MCM6	P53091	1017 aa	Known RBP	5.72	□□□□□ -1.49
REX4	YOL080C	SSL1	Q04673	461 aa	Predicted RBP	5.72	□□□□□ -1.49
REX4	YOL080C	YKL091C	P33324	310 aa	Known RBP	5.71	□□□□□ -1.5
REX4	YOL080C	STE13	P33894	931 aa		5.71	□□□□□ -1.5
REX4	YOL080C	YOR131C	Q12486	218 aa		5.71	□□□□□ -1.5
REX4	YOL080C	GAL11	P19659	1081 aa		5.7	□□□□□ -1.5
REX4	YOL080C	GGA2	P38817	585 aa	Known RBP	5.7	□□□□□ -1.5
REX4	YOL080C	ENV7	Q12003	364 aa		5.7	□□□□□ -1.5
REX4	YOL080C	KCS1	Q12494	1050 aa		5.7	□□□□□ -1.5
REX4	YOL080C	RPP2A	P05319	106 aa	Known RBP	5.69	□□□□□ -1.5
REX4	YOL080C	URM1	P40554	99 aa	Predicted RBP	5.69	□□□□□ -1.5
REX4	YOL080C	CEP3	P40969	608 aa		5.69	□□□□□ -1.5
REX4	YOL080C	MNN10	P50108	393 aa	Known RBP	5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 311.1 ms