Protein–RNA interactions for Protein: Q01560

NPL3, Nucleolar protein 3, yeastyeast

Known RBP RIP-Chip data

Length 414 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
NPL3Q01560 YML009W-BYML009W-B 477 nt20.3■□□□□ 0.84
NPL3Q01560 NSR1YGR159C 1245 nt20.12■□□□□ 0.81
NPL3Q01560 NOP1YDL014W 984 nt19.76■□□□□ 0.75
NPL3Q01560 YKL036CYKL036C 393 nt18.24■□□□□ 0.51
NPL3Q01560 MDJ1YFL016C 1536 nt17.84■□□□□ 0.45
NPL3Q01560 Q0297Q0297 156 nt17.26■□□□□ 0.35
NPL3Q01560 SRX1YKL086W 384 nt17.23■□□□□ 0.35
NPL3Q01560 YJL027CYJL027C 417 nt17.04■□□□□ 0.32
NPL3Q01560 SCS3YGL126W 1143 nt16.58■□□□□ 0.24 RIP-Chip
NPL3Q01560 YCR051WYCR051W 669 nt16.38■□□□□ 0.21
NPL3Q01560 YOL085CYOL085C 342 nt15.77■□□□□ 0.12
NPL3Q01560 DBP2YNL112W 1641 nt15.74■□□□□ 0.11
NPL3Q01560 TRN1tP(UGG)A 72 nt15.55■□□□□ 0.08
NPL3Q01560 SUF9tP(UGG)F 72 nt15.55■□□□□ 0.08
NPL3Q01560 SUF8tP(UGG)H 72 nt15.55■□□□□ 0.08
NPL3Q01560 tP(UGG)LtP(UGG)L 72 nt15.55■□□□□ 0.08
NPL3Q01560 SUF7tP(UGG)M 72 nt15.55■□□□□ 0.08
NPL3Q01560 tP(UGG)N1tP(UGG)N1 72 nt15.55■□□□□ 0.08
NPL3Q01560 tP(UGG)N2tP(UGG)N2 72 nt15.55■□□□□ 0.08
NPL3Q01560 tP(UGG)O1tP(UGG)O1 72 nt15.55■□□□□ 0.08
NPL3Q01560 SUF11tP(UGG)O2 72 nt15.55■□□□□ 0.08
NPL3Q01560 PKP1YIL042C 1185 nt15.54■□□□□ 0.08 RIP-Chip
NPL3Q01560 RPP1BYDL130W 321 nt15.5■□□□□ 0.07
NPL3Q01560 CCC1YLR220W 969 nt15.43■□□□□ 0.06
NPL3Q01560 YBR190WYBR190W 312 nt15.21■□□□□ 0.03
NPL3Q01560 SCJ1YMR214W 1134 nt14.97□□□□□ -0.01
NPL3Q01560 RTC3YHR087W 336 nt14.92□□□□□ -0.02 RIP-Chip
NPL3Q01560 RVS167YDR388W 1449 nt14.92□□□□□ -0.02
NPL3Q01560 ATS1YAL020C 1002 nt14.83□□□□□ -0.04
NPL3Q01560 PET122YER153C 765 nt14.79□□□□□ -0.04
NPL3Q01560 tP(UGG)O3tP(UGG)O3 72 nt14.73□□□□□ -0.05
NPL3Q01560 SCR1SCR1 522 nt14.7□□□□□ -0.06
NPL3Q01560 RRN5YLR141W 1092 nt14.37□□□□□ -0.11 RIP-Chip
NPL3Q01560 SHR5YOL110W 714 nt14.36□□□□□ -0.11
NPL3Q01560 YDJ1YNL064C 1230 nt14.25□□□□□ -0.13
NPL3Q01560 SSA3YBL075C 1950 nt14.13□□□□□ -0.15
NPL3Q01560 RSB1YOR049C 1065 nt14.12□□□□□ -0.15
NPL3Q01560 YER088W-BYER088W-B 147 nt14.08□□□□□ -0.16
NPL3Q01560 Q0182Q0182 405 nt14.07□□□□□ -0.16
NPL3Q01560 DEP1YAL013W 1218 nt13.95□□□□□ -0.18 RIP-Chip
NPL3Q01560 URN1YPR152C 1398 nt13.95□□□□□ -0.18
NPL3Q01560 GAR1YHR089C 618 nt13.94□□□□□ -0.18
NPL3Q01560 RPN10YHR200W 807 nt13.79□□□□□ -0.2 RIP-Chip
NPL3Q01560 YNL208WYNL208W 600 nt13.74□□□□□ -0.21 RIP-Chip
NPL3Q01560 PUT4YOR348C 1884 nt13.74□□□□□ -0.21
NPL3Q01560 OPI9YLR338W 858 nt13.72□□□□□ -0.21
NPL3Q01560 PST2YDR032C 597 nt13.7□□□□□ -0.22
NPL3Q01560 MOT3YMR070W 1473 nt13.69□□□□□ -0.22
NPL3Q01560 SAH1YER043C 1350 nt13.62□□□□□ -0.23
NPL3Q01560 ARE1YCR048W 1833 nt13.5□□□□□ -0.25
NPL3Q01560 TIR1YER011W 765 nt13.46□□□□□ -0.25
NPL3Q01560 YHR049C-AYHR049C-A 297 nt13.38□□□□□ -0.27
NPL3Q01560 PUN1YLR414C 792 nt13.36□□□□□ -0.27 RIP-Chip
NPL3Q01560 POA1YBR022W 534 nt13.35□□□□□ -0.27
NPL3Q01560 YJR018WYJR018W 363 nt13.31□□□□□ -0.28
NPL3Q01560 SSA1YAL005C 1929 nt13.26□□□□□ -0.29
NPL3Q01560 YKL097CYKL097C 411 nt13.24□□□□□ -0.29
NPL3Q01560 PTC2YER089C 1395 nt13.17□□□□□ -0.3 RIP-Chip
NPL3Q01560 SHU1YHL006C 453 nt13.15□□□□□ -0.3
NPL3Q01560 BUD23YCR047C 828 nt13.11□□□□□ -0.31
NPL3Q01560 RPP2BYDR382W 333 nt13.09□□□□□ -0.31
NPL3Q01560 BSC6YOL137W 1494 nt13.05□□□□□ -0.32
NPL3Q01560 YJR120WYJR120W 351 nt13.04□□□□□ -0.32
NPL3Q01560 SRB2YHR041C 633 nt13□□□□□ -0.33
NPL3Q01560 NAB2YGL122C 1578 nt12.99□□□□□ -0.33
NPL3Q01560 YAL037C-BYAL037C-B 975 nt12.95□□□□□ -0.34
NPL3Q01560 WWM1YFL010C 636 nt12.86□□□□□ -0.35
NPL3Q01560 INM2YDR287W 879 nt12.84□□□□□ -0.35
NPL3Q01560 YGR021WYGR021W 873 nt12.84□□□□□ -0.35 RIP-Chip
NPL3Q01560 FPR4YLR449W 1179 nt12.84□□□□□ -0.35
NPL3Q01560 DAL1YIR027C 1383 nt12.82□□□□□ -0.36
NPL3Q01560 FIS1YIL065C 468 nt12.79□□□□□ -0.36 RIP-Chip
NPL3Q01560 BDH2YAL061W 1254 nt12.79□□□□□ -0.36
NPL3Q01560 HOM6YJR139C 1080 nt12.75□□□□□ -0.37
NPL3Q01560 YBL100CYBL100C 315 nt12.72□□□□□ -0.37
NPL3Q01560 PHO4YFR034C 939 nt12.71□□□□□ -0.37 RIP-Chip
NPL3Q01560 MNP1YGL068W 585 nt12.7□□□□□ -0.38 RIP-Chip
NPL3Q01560 YFL021C-AYFL021C-A 855 nt12.68□□□□□ -0.38
NPL3Q01560 YOR139CYOR139C 393 nt12.64□□□□□ -0.39
NPL3Q01560 LSM3YLR438C-A 270 nt12.63□□□□□ -0.39 RIP-Chip
NPL3Q01560 NPL3YDR432W 1245 nt12.61□□□□□ -0.39 RIP-Chip
NPL3Q01560 RKM5YLR137W 1104 nt12.57□□□□□ -0.4
NPL3Q01560 TRM9YML014W 840 nt12.56□□□□□ -0.4
NPL3Q01560 FUN26YAL022C 1554 nt12.56□□□□□ -0.4
NPL3Q01560 YOL037CYOL037C 354 nt12.53□□□□□ -0.4
NPL3Q01560 ALF1YNL148C 765 nt12.43□□□□□ -0.42 RIP-Chip
NPL3Q01560 YPS1YLR120C 1710 nt12.42□□□□□ -0.42
NPL3Q01560 SSA4YER103W 1929 nt12.41□□□□□ -0.42
NPL3Q01560 CCT6YDR188W 1641 nt12.4□□□□□ -0.42
NPL3Q01560 YDR095CYDR095C 411 nt12.36□□□□□ -0.43
NPL3Q01560 SUF2tP(AGG)C 72 nt12.34□□□□□ -0.43
NPL3Q01560 SUF10tP(AGG)N 72 nt12.34□□□□□ -0.43
NPL3Q01560 YHR165W-AYHR165W-A 312 nt12.34□□□□□ -0.43
NPL3Q01560 SPT5YML010W 3192 nt12.28□□□□□ -0.44
NPL3Q01560 MEP2YNL142W 1500 nt12.23□□□□□ -0.45
NPL3Q01560 YLR281CYLR281C 468 nt12.19□□□□□ -0.46
NPL3Q01560 WHI5YOR083W 888 nt12.17□□□□□ -0.46 RIP-Chip
NPL3Q01560 SIS1YNL007C 1059 nt12.16□□□□□ -0.46
NPL3Q01560 tM(CAU)CtM(CAU)C 72 nt12.15□□□□□ -0.46
NPL3Q01560 IMT4tM(CAU)E 72 nt12.15□□□□□ -0.46
Retrieved 100 of 7,029 protein–RNA pairs in 15.8 ms