RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W HMLALPHA2P0CY09 210 aa6.79□□□□□ -1.32
RPN11YFR004W POX1P13711 748 aa6.79□□□□□ -1.32
RPN11YFR004W ATE1P16639 503 aa6.79□□□□□ -1.32
RPN11YFR004W TGL1P34163 548 aa6.79□□□□□ -1.32
RPN11YFR004W MAL33P38157 468 aa6.79□□□□□ -1.32
RPN11YFR004W YHL050CP38721 697 aa6.79□□□□□ -1.32
RPN11YFR004W JHD1P40034 492 aa6.79□□□□□ -1.32
RPN11YFR004W VPS53P47061 822 aa6.79□□□□□ -1.32
RPN11YFR004W SCS3P53012 380 aa6.79□□□□□ -1.32
RPN11YFR004W DAK1P54838 584 aaKnown RBP6.79□□□□□ -1.32
RPN11YFR004W RRP15Q06511 250 aaPredicted RBP6.79□□□□□ -1.32
RPN11YFR004W GPA1P08539 472 aa6.78□□□□□ -1.32
RPN11YFR004W SAM1P10659 382 aaKnown RBP6.78□□□□□ -1.32
RPN11YFR004W SAM2P19358 384 aaKnown RBP6.78□□□□□ -1.32
RPN11YFR004W POT1P27796 417 aaKnown RBP RIP-Chip data6.78□□□□□ -1.32not detected
RPN11YFR004W MFT1P33441 392 aaKnown RBP6.78□□□□□ -1.32
RPN11YFR004W GPT2P36148 743 aa6.78□□□□□ -1.32
RPN11YFR004W RTS1P38903 757 aa6.78□□□□□ -1.32
RPN11YFR004W YER130CP39959 443 aa6.78□□□□□ -1.32
RPN11YFR004W VID27P40157 782 aa6.78□□□□□ -1.32
RPN11YFR004W NAF1P53919 492 aaKnown RBP6.78□□□□□ -1.32
RPN11YFR004W SLD5Q03406 294 aa6.78□□□□□ -1.32
RPN11YFR004W ESC2Q06340 456 aa6.78□□□□□ -1.32
RPN11YFR004W ETT1Q08421 412 aaKnown RBP6.78□□□□□ -1.32
RPN11YFR004W TAH18Q12181 623 aa6.78□□□□□ -1.32
RPN11YFR004W RTP1Q12751 981 aa6.78□□□□□ -1.32
RPN11YFR004W YBL113CQ7M4S9 792 aa6.78□□□□□ -1.32
RPN11YFR004W RAD61Q99359 647 aa6.78□□□□□ -1.32
RPN11YFR004W CYC8P14922 966 aa6.77□□□□□ -1.33
RPN11YFR004W HCA4P20448 770 aaKnown RBP6.77□□□□□ -1.33
RPN11YFR004W SLY41P22215 453 aa6.77□□□□□ -1.33
RPN11YFR004W MCM4P30665 933 aaKnown RBP6.77□□□□□ -1.33
RPN11YFR004W DBP7P36120 742 aaKnown RBP6.77□□□□□ -1.33
RPN11YFR004W MET1P36150 593 aa6.77□□□□□ -1.33
RPN11YFR004W ERP5P38819 212 aa6.77□□□□□ -1.33
RPN11YFR004W FYV10P40492 516 aa6.77□□□□□ -1.33
RPN11YFR004W ENP2P48234 707 aaKnown RBP6.77□□□□□ -1.33
RPN11YFR004W MCM6P53091 1017 aaKnown RBP6.77□□□□□ -1.33
RPN11YFR004W YGL039WP53183 348 aaKnown RBP6.77□□□□□ -1.33
RPN11YFR004W ECM23Q02710 187 aa6.77□□□□□ -1.33
RPN11YFR004W TMA64Q04600 565 aaKnown RBP6.77□□□□□ -1.33
RPN11YFR004W SPH1Q06160 661 aa6.77□□□□□ -1.33
RPN11YFR004W ISA1Q07821 250 aaPredicted RBP6.77□□□□□ -1.33
RPN11YFR004W GYP1Q08484 637 aa6.77□□□□□ -1.33
RPN11YFR004W ERP3Q12403 225 aa6.77□□□□□ -1.33
RPN11YFR004W DDP1Q99321 188 aaKnown RBP6.77□□□□□ -1.33
RPN11YFR004W TAF13P11747 167 aa6.76□□□□□ -1.33
RPN11YFR004W NUD1P32336 851 aa6.76□□□□□ -1.33
RPN11YFR004W TFC4P33339 1025 aa6.76□□□□□ -1.33
RPN11YFR004W SHP1P34223 423 aa6.76□□□□□ -1.33
RPN11YFR004W SKI2P35207 1287 aaKnown RBP RIP-Chip data6.76□□□□□ -1.33not detected
RPN11YFR004W MNR2P35724 969 aa6.76□□□□□ -1.33
RPN11YFR004W POA1P38218 177 aa6.76□□□□□ -1.33
RPN11YFR004W PES4P39684 611 aa6.76□□□□□ -1.33
RPN11YFR004W YNL115CP53925 644 aa6.76□□□□□ -1.33
RPN11YFR004W YMR321CQ04898 105 aa6.76□□□□□ -1.33
RPN11YFR004W DUS3Q06053 668 aaKnown RBP6.76□□□□□ -1.33
RPN11YFR004W YLR407WQ06070 228 aa6.76□□□□□ -1.33
RPN11YFR004W DAP1Q12091 152 aa6.76□□□□□ -1.33
RPN11YFR004W SSF2Q12153 453 aaPredicted RBP6.76□□□□□ -1.33
RPN11YFR004W MCM16Q12262 181 aa6.76□□□□□ -1.33
RPN11YFR004W TRM11Q12463 433 aa6.76□□□□□ -1.33
RPN11YFR004W MYO1P08964 1928 aa6.76□□□□□ -1.33
RPN11YFR004W HSP82P02829 709 aaKnown RBP6.75□□□□□ -1.33
RPN11YFR004W TRM1P15565 570 aaKnown RBP6.75□□□□□ -1.33
RPN11YFR004W RAM1P22007 431 aa6.75□□□□□ -1.33
RPN11YFR004W MCR1P36060 302 aaKnown RBP6.75□□□□□ -1.33
RPN11YFR004W RRP8P38961 392 aaKnown RBP6.75□□□□□ -1.33
RPN11YFR004W XDJ1P39102 459 aa6.75□□□□□ -1.33
RPN11YFR004W YPT11P48559 417 aa6.75□□□□□ -1.33
RPN11YFR004W NOP58Q12499 511 aaKnown RBP6.75□□□□□ -1.33
RPN11YFR004W SNA3P14359 133 aa6.74□□□□□ -1.33
RPN11YFR004W RGP1P16664 663 aa6.74□□□□□ -1.33
RPN11YFR004W COQ1P18900 473 aa6.74□□□□□ -1.33
RPN11YFR004W TKL1P23254 680 aaKnown RBP6.74□□□□□ -1.33
RPN11YFR004W SEC20P28791 383 aa6.74□□□□□ -1.33
RPN11YFR004W SEC8P32855 1065 aa6.74□□□□□ -1.33
RPN11YFR004W RER2P35196 286 aa6.74□□□□□ -1.33
RPN11YFR004W MPE1P35728 441 aaKnown RBP6.74□□□□□ -1.33
RPN11YFR004W OCA5P38738 679 aa6.74□□□□□ -1.33
RPN11YFR004W RRM3P38766 723 aa6.74□□□□□ -1.33
RPN11YFR004W AKR1P39010 764 aa6.74□□□□□ -1.33
RPN11YFR004W VPS8P39702 1274 aa6.74□□□□□ -1.33
RPN11YFR004W MRD1Q06106 887 aaKnown RBP6.74□□□□□ -1.33
RPN11YFR004W EST2Q06163 884 aa6.74□□□□□ -1.33
RPN11YFR004W SPN1Q06505 410 aaPredicted RBP6.74□□□□□ -1.33
RPN11YFR004W GUD1Q07729 489 aa6.74□□□□□ -1.33
RPN11YFR004W YPR015CQ12531 247 aa6.74□□□□□ -1.33
RPN11YFR004W YDR461C-AQ2V2P7 80 aa6.74□□□□□ -1.33
RPN11YFR004W HXK1P04806 485 aaKnown RBP6.73□□□□□ -1.33
RPN11YFR004W PHR1P05066 565 aaKnown RBP RIP-Chip data6.73□□□□□ -1.33not detected
RPN11YFR004W CHO2P05374 869 aaKnown RBP6.73□□□□□ -1.33
RPN11YFR004W ASF1P32447 279 aa6.73□□□□□ -1.33
RPN11YFR004W RPN10P38886 268 aaKnown RBP6.73□□□□□ -1.33
RPN11YFR004W CRG1P38892 291 aaRIP-Chip data6.73□□□□□ -1.33not detected
RPN11YFR004W SGM1P47166 707 aa6.73□□□□□ -1.33
RPN11YFR004W HDA1P53973 706 aa6.73□□□□□ -1.33
RPN11YFR004W VPS72Q03388 795 aa6.73□□□□□ -1.33
RPN11YFR004W NUM1Q00402 2748 aa6.73□□□□□ -1.33
RPN11YFR004W FAB1P34756 2278 aa6.73□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 38.4 ms