RNA–Protein interactions for RNA: YNL232W

CSL4, Transcript of Exosome non-catalytic core component, yeast

Gene CSL4, Length 879 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSL4	YNL232W	PKH1	Q03407	766 aa		7.43	□□□□□ -1.22
CSL4	YNL232W	MRP10	O75012	95 aa		7.42	□□□□□ -1.22
CSL4	YNL232W	RPS7A	P26786	190 aa	Known RBP	7.42	□□□□□ -1.22
CSL4	YNL232W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	7.42	□□□□□ -1.22	not detected
CSL4	YNL232W	POL5	P39985	1022 aa	Known RBP	7.42	□□□□□ -1.22
CSL4	YNL232W	DUR1,2	P32528	1835 aa	Known RBP	7.41	□□□□□ -1.22
CSL4	YNL232W	MGM1	P32266	881 aa		7.41	□□□□□ -1.22
CSL4	YNL232W	RRP46	P53256	223 aa	Predicted RBP	7.41	□□□□□ -1.22
CSL4	YNL232W	COQ4	O13525	335 aa		7.4	□□□□□ -1.22
CSL4	YNL232W	EAR1	Q03212	550 aa		7.4	□□□□□ -1.22
CSL4	YNL232W	GIN4	Q12263	1142 aa		7.4	□□□□□ -1.22
CSL4	YNL232W	TRS33	Q99394	268 aa		7.4	□□□□□ -1.22
CSL4	YNL232W	YMR084W	A2P2R3	262 aa		7.39	□□□□□ -1.23
CSL4	YNL232W	IDI1	P15496	288 aa		7.39	□□□□□ -1.23
CSL4	YNL232W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	7.39	□□□□□ -1.23	not detected
CSL4	YNL232W	LCB1	P25045	558 aa	Known RBP	7.39	□□□□□ -1.23
CSL4	YNL232W	ITC1	P53125	1264 aa		7.39	□□□□□ -1.23
CSL4	YNL232W	VPS62	P53285	467 aa		7.39	□□□□□ -1.23
CSL4	YNL232W	IRC4	Q03036	179 aa		7.39	□□□□□ -1.23
CSL4	YNL232W	THI3	Q07471	609 aa		7.39	□□□□□ -1.23
CSL4	YNL232W	PPM2	Q08282	695 aa		7.39	□□□□□ -1.23
CSL4	YNL232W	BMS1	Q08965	1183 aa	Known RBP	7.39	□□□□□ -1.23
CSL4	YNL232W	FLO1	P32768	1537 aa		7.38	□□□□□ -1.23
CSL4	YNL232W	UBX7	P38349	436 aa		7.38	□□□□□ -1.23
CSL4	YNL232W	ZDS1	P50111	915 aa	Known RBP	7.38	□□□□□ -1.23
CSL4	YNL232W	DMA2	P53924	522 aa		7.38	□□□□□ -1.23
CSL4	YNL232W	ACK1	Q07622	623 aa	Predicted RBP	7.38	□□□□□ -1.23
CSL4	YNL232W	AI3	P03877	415 aa		7.37	□□□□□ -1.23
CSL4	YNL232W	VMA3	P25515	160 aa		7.37	□□□□□ -1.23
CSL4	YNL232W	LDH1	P38139	375 aa		7.37	□□□□□ -1.23
CSL4	YNL232W	ERG7	P38604	731 aa		7.37	□□□□□ -1.23
CSL4	YNL232W	RRM3	P38766	723 aa		7.37	□□□□□ -1.23
CSL4	YNL232W	SWI1	P09547	1314 aa		7.36	□□□□□ -1.23
CSL4	YNL232W	MRPL33	P20084	86 aa		7.36	□□□□□ -1.23
CSL4	YNL232W	YBR287W	P38355	427 aa		7.36	□□□□□ -1.23
CSL4	YNL232W	FIR1	P40020	876 aa		7.36	□□□□□ -1.23
CSL4	YNL232W	ALO1	P54783	526 aa	Known RBP	7.36	□□□□□ -1.23
CSL4	YNL232W	WRS1	Q12109	432 aa	Known RBP	7.36	□□□□□ -1.23
CSL4	YNL232W	KEL1	P38853	1164 aa	Known RBP	7.35	□□□□□ -1.23
CSL4	YNL232W	DNM1	P54861	757 aa		7.35	□□□□□ -1.23
CSL4	YNL232W	YOL057W	Q08225	711 aa		7.35	□□□□□ -1.23
CSL4	YNL232W	YBR197C	P38306	217 aa		7.34	□□□□□ -1.23
CSL4	YNL232W	MAM1	P40065	302 aa		7.34	□□□□□ -1.23
CSL4	YNL232W	ECM30	Q06673	1274 aa		7.34	□□□□□ -1.23
CSL4	YNL232W	YOR296W	Q08748	1289 aa		7.34	□□□□□ -1.23
CSL4	YNL232W	SAC3	P46674	1301 aa		7.33	□□□□□ -1.24
CSL4	YNL232W	SAC7	P17121	654 aa		7.33	□□□□□ -1.24
CSL4	YNL232W	WHI3	P34761	661 aa	Known RBP	7.33	□□□□□ -1.24
CSL4	YNL232W	NET1	P47035	1189 aa		7.33	□□□□□ -1.24
CSL4	YNL232W	ATG1	P53104	897 aa		7.33	□□□□□ -1.24
CSL4	YNL232W	ADR1	P07248	1323 aa		7.32	□□□□□ -1.24
CSL4	YNL232W	RAD53	P22216	821 aa		7.32	□□□□□ -1.24
CSL4	YNL232W	DYS1	P38791	387 aa		7.32	□□□□□ -1.24
CSL4	YNL232W	YJR008W	P47085	338 aa		7.32	□□□□□ -1.24
CSL4	YNL232W	PUP1	P25043	261 aa		7.31	□□□□□ -1.24
CSL4	YNL232W	PGM1	P33401	570 aa	Known RBP	7.31	□□□□□ -1.24
CSL4	YNL232W	YDR034W-B	Q6Q5X2	51 aa		7.31	□□□□□ -1.24
CSL4	YNL232W	PRD1	P25375	712 aa		7.3	□□□□□ -1.24
CSL4	YNL232W	GIP1	P38229	639 aa		7.3	□□□□□ -1.24
CSL4	YNL232W	YDR306C	Q06640	478 aa		7.3	□□□□□ -1.24
CSL4	YNL232W	PSF3	Q12146	194 aa		7.3	□□□□□ -1.24
CSL4	YNL232W	ISC10	P32645	267 aa		7.29	□□□□□ -1.24
CSL4	YNL232W	NUP133	P36161	1157 aa		7.29	□□□□□ -1.24
CSL4	YNL232W	ARI1	P53111	347 aa	Known RBP	7.29	□□□□□ -1.24
CSL4	YNL232W	CFT2	Q12102	859 aa	Predicted RBP	7.29	□□□□□ -1.24
CSL4	YNL232W	TY3A-G	Q12173	290 aa		7.29	□□□□□ -1.24
CSL4	YNL232W	TY3A-I	Q99219	290 aa		7.29	□□□□□ -1.24
CSL4	YNL232W	ECM29	P38737	1868 aa		7.28	□□□□□ -1.24
CSL4	YNL232W	CDC60	P26637	1090 aa	Known RBP	7.28	□□□□□ -1.24
CSL4	YNL232W	SFA1	P32771	386 aa		7.28	□□□□□ -1.24
CSL4	YNL232W	OCT1	P35999	772 aa		7.28	□□□□□ -1.24
CSL4	YNL232W	OMA1	P36163	345 aa		7.28	□□□□□ -1.24
CSL4	YNL232W	YFL040W	P43562	540 aa		7.28	□□□□□ -1.24
CSL4	YNL232W	INP52	P50942	1183 aa		7.28	□□□□□ -1.24
CSL4	YNL232W	SLP1	Q12232	587 aa		7.28	□□□□□ -1.24
CSL4	YNL232W	AHC1	Q12433	566 aa		7.28	□□□□□ -1.24
CSL4	YNL232W	UIP5	P36137	443 aa		7.27	□□□□□ -1.25
CSL4	YNL232W	RTR1	P40084	226 aa	Predicted RBP	7.27	□□□□□ -1.25
CSL4	YNL232W	TED1	P40533	473 aa		7.27	□□□□□ -1.25
CSL4	YNL232W	YOR131C	Q12486	218 aa		7.27	□□□□□ -1.25
CSL4	YNL232W	UBR2	Q07963	1872 aa		7.27	□□□□□ -1.25
CSL4	YNL232W	PMA1	P05030	918 aa	Known RBP	7.26	□□□□□ -1.25
CSL4	YNL232W	RPT3	P33298	428 aa	Known RBP	7.26	□□□□□ -1.25
CSL4	YNL232W	MCD4	P36051	919 aa		7.26	□□□□□ -1.25
CSL4	YNL232W	NUG1	P40010	520 aa	Known RBP	7.26	□□□□□ -1.25
CSL4	YNL232W	AIM21	P40563	679 aa		7.26	□□□□□ -1.25
CSL4	YNL232W	YFH7	P43591	353 aa		7.26	□□□□□ -1.25
CSL4	YNL232W	GYP7	P48365	746 aa		7.26	□□□□□ -1.25
CSL4	YNL232W	ICL2	Q12031	575 aa		7.26	□□□□□ -1.25
CSL4	YNL232W	TY4B-P	A0A0B7P3V8	1104 aa		7.25	□□□□□ -1.25
CSL4	YNL232W	SUP35	P05453	685 aa	Known RBP	7.25	□□□□□ -1.25
CSL4	YNL232W	HIP1	P06775	603 aa		7.25	□□□□□ -1.25
CSL4	YNL232W	ADP1	P25371	1049 aa		7.25	□□□□□ -1.25
CSL4	YNL232W	ISW1	P38144	1129 aa		7.25	□□□□□ -1.25
CSL4	YNL232W	ACA1	P39970	489 aa		7.25	□□□□□ -1.25
CSL4	YNL232W	GIP2	P40036	548 aa		7.25	□□□□□ -1.25
CSL4	YNL232W	SOK2	P53438	785 aa	Predicted RBP	7.25	□□□□□ -1.25
CSL4	YNL232W	PUN1	Q06991	263 aa		7.25	□□□□□ -1.25
CSL4	YNL232W	SUT2	Q12286	268 aa		7.25	□□□□□ -1.25
CSL4	YNL232W	TY4A-H	Q6Q5P6	413 aa		7.25	□□□□□ -1.25

Retrieved 100 of 5,963 RNA–protein pairs in 36.1 ms