Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.22■■■■□ 3.07
IRX4P78413 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.06■■■■□ 3.04
IRX4P78413 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.63■■■□□ 2.97
IRX4P78413 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC33.57■■■□□ 2.96
IRX4P78413 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
IRX4P78413 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
IRX4P78413 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
IRX4P78413 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.93■■■□□ 2.86
IRX4P78413 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC32.89■■■□□ 2.86
IRX4P78413 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.81■■■□□ 2.84
IRX4P78413 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.63■■■□□ 2.81
IRX4P78413 AL356512.1-201ENST00000607453 1739 ntBASIC32.54■■■□□ 2.8
IRX4P78413 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.51■■■□□ 2.8
IRX4P78413 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.49■■■□□ 2.79
IRX4P78413 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC32.48■■■□□ 2.79
IRX4P78413 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
IRX4P78413 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.27■■■□□ 2.76
IRX4P78413 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.24■■■□□ 2.75
IRX4P78413 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.23■■■□□ 2.75
IRX4P78413 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
IRX4P78413 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
IRX4P78413 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
IRX4P78413 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.89■■■□□ 2.7
IRX4P78413 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.87■■■□□ 2.69
IRX4P78413 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.84■■■□□ 2.69
IRX4P78413 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.75■■■□□ 2.67
IRX4P78413 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
IRX4P78413 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
IRX4P78413 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
IRX4P78413 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.55■■■□□ 2.64
IRX4P78413 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
IRX4P78413 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.52■■■□□ 2.64
IRX4P78413 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.48■■■□□ 2.63
IRX4P78413 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
IRX4P78413 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
IRX4P78413 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
IRX4P78413 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
IRX4P78413 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.37■■■□□ 2.61
IRX4P78413 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
IRX4P78413 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
IRX4P78413 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
IRX4P78413 ZNRF2P1-201ENST00000441407 443 ntBASIC31.1■■■□□ 2.57
IRX4P78413 AC006077.2-201ENST00000623591 457 ntBASIC31.09■■■□□ 2.57
IRX4P78413 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.56
IRX4P78413 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.01■■■□□ 2.55
IRX4P78413 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.55
IRX4P78413 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
IRX4P78413 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.53
IRX4P78413 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
IRX4P78413 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.85■■■□□ 2.53
IRX4P78413 AC015813.7-201ENST00000623294 581 ntBASIC30.84■■■□□ 2.53
IRX4P78413 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.81■■■□□ 2.52
IRX4P78413 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
IRX4P78413 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
IRX4P78413 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
IRX4P78413 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
IRX4P78413 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.51■■■□□ 2.47
IRX4P78413 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.44■■■□□ 2.46
IRX4P78413 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.42■■■□□ 2.46
IRX4P78413 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
IRX4P78413 AP002365.1-201ENST00000603448 772 ntBASIC30.33■■■□□ 2.45
IRX4P78413 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
IRX4P78413 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
IRX4P78413 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
IRX4P78413 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
IRX4P78413 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
IRX4P78413 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.17■■■□□ 2.42
IRX4P78413 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.17■■■□□ 2.42
IRX4P78413 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
IRX4P78413 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.13■■■□□ 2.41
IRX4P78413 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.12■■■□□ 2.41
IRX4P78413 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
IRX4P78413 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
IRX4P78413 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.11■■■□□ 2.41
IRX4P78413 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
IRX4P78413 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.1■■■□□ 2.41
IRX4P78413 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
IRX4P78413 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
IRX4P78413 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
IRX4P78413 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30■■■□□ 2.39
IRX4P78413 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30■■■□□ 2.39
IRX4P78413 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
IRX4P78413 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC29.96■■■□□ 2.39
IRX4P78413 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC29.92■■■□□ 2.38
IRX4P78413 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
IRX4P78413 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.85■■■□□ 2.37
IRX4P78413 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
IRX4P78413 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
IRX4P78413 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC29.79■■■□□ 2.36
IRX4P78413 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC29.76■■■□□ 2.35
IRX4P78413 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
IRX4P78413 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC29.74■■■□□ 2.35
IRX4P78413 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.73■■■□□ 2.35
IRX4P78413 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
IRX4P78413 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
IRX4P78413 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
IRX4P78413 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
IRX4P78413 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC29.65■■■□□ 2.34
IRX4P78413 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
IRX4P78413 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.63■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms