Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 NCALD-202ENST00000311028 3655 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.282e-6■■■□□ 17.8
UPF1Q92900 NCALD-203ENST00000395923 3808 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.862e-6■■■□□ 17.8
UPF1Q92900 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.932e-6■■■□□ 17.8
UPF1Q92900 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC24.9■■□□□ 1.584e-7■■■□□ 17.8
UPF1Q92900 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.74■□□□□ 0.914e-7■■■□□ 17.8
UPF1Q92900 FAM131A-201ENST00000310585 3677 ntTSL 2 BASIC14.88□□□□□ -0.034e-7■■■□□ 17.8
UPF1Q92900 FAM131A-211ENST00000639617 4450 ntTSL 5 BASIC12.26□□□□□ -0.454e-7■■■□□ 17.8
UPF1Q92900 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC10.61□□□□□ -0.713e-10■■■□□ 17.8
UPF1Q92900 CS-215ENST00000549143 2811 ntTSL 29.71□□□□□ -0.863e-10■■■□□ 17.8
UPF1Q92900 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.013e-10■■■□□ 17.8
UPF1Q92900 CS-213ENST00000548746 551 ntTSL 58.08□□□□□ -1.123e-10■■■□□ 17.8
UPF1Q92900 ZNF219-205ENST00000553980 576 ntTSL 428.55■■■□□ 2.162e-7■■■□□ 17.8
UPF1Q92900 ZNF219-206ENST00000554478 545 ntTSL 423.79■■□□□ 1.42e-7■■■□□ 17.8
UPF1Q92900 ZNF219-211ENST00000556174 546 ntTSL 422.24■■□□□ 1.152e-7■■■□□ 17.8
UPF1Q92900 USP14-201ENST00000261601 4921 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.088e-7■■■□□ 17.8
UPF1Q92900 GOSR2-242ENST00000640711 1083 ntTSL 5 BASIC16.6■□□□□ 0.251e-8■■■□□ 17.8
UPF1Q92900 GOSR2-220ENST00000638838 3266 ntAPPRIS ALT1 TSL 5 BASIC10.9□□□□□ -0.671e-8■■■□□ 17.8
UPF1Q92900 ST3GAL2-205ENST00000567586 557 ntTSL 436.2■■■■□ 3.394e-21■■■□□ 17.8
UPF1Q92900 LRSAM1-206ENST00000483302 1994 ntTSL 219.95■□□□□ 0.784e-7■■■□□ 17.8
UPF1Q92900 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.094e-7■■■□□ 17.8
UPF1Q92900 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.07□□□□□ -0.164e-7■■■□□ 17.8
UPF1Q92900 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.314e-7■■■□□ 17.8
UPF1Q92900 LRSAM1-202ENST00000323301 3376 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.384e-7■■■□□ 17.8
UPF1Q92900 SF3A3-201ENST00000373019 3673 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.775e-9■■■□□ 17.8
UPF1Q92900 GNB1L-206ENST00000481086 854 ntTSL 328.47■■■□□ 2.153e-9■■■□□ 17.8
UPF1Q92900 GNB1L-204ENST00000453108 702 ntTSL 328.46■■■□□ 2.153e-9■■■□□ 17.8
UPF1Q92900 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.743e-9■■■□□ 17.8
UPF1Q92900 GNB1L-205ENST00000460402 1197 ntTSL 325.86■■□□□ 1.733e-9■■■□□ 17.8
UPF1Q92900 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC25.67■■□□□ 1.73e-9■■■□□ 17.8
UPF1Q92900 RTL10-205ENST00000484072 1385 ntTSL 218.59■□□□□ 0.573e-9■■■□□ 17.8
UPF1Q92900 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.293e-9■■■□□ 17.8
UPF1Q92900 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.373e-9■■■□□ 17.8
UPF1Q92900 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.413e-9■■■□□ 17.8
UPF1Q92900 RTL10-203ENST00000407472 6523 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.733e-9■■■□□ 17.8
UPF1Q92900 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.912e-6■■■□□ 17.8
UPF1Q92900 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC33.62■■■□□ 2.972e-6■■■□□ 17.8
UPF1Q92900 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC33.22■■■□□ 2.912e-6■■■□□ 17.8
UPF1Q92900 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC32.12■■■□□ 2.732e-6■■■□□ 17.8
UPF1Q92900 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.462e-6■■■□□ 17.8
UPF1Q92900 ALG3-204ENST00000423996 904 ntTSL 227.96■■■□□ 2.073e-8■■■□□ 17.8
UPF1Q92900 ALG3-206ENST00000446569 967 ntTSL 525.13■■□□□ 1.613e-8■■■□□ 17.8
UPF1Q92900 ALG3-203ENST00000414845 814 ntTSL 524.73■■□□□ 1.553e-8■■■□□ 17.8
UPF1Q92900 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.43e-8■■■□□ 17.8
UPF1Q92900 ALG3-202ENST00000411922 1452 ntTSL 1 (best)23.02■■□□□ 1.283e-8■■■□□ 17.8
UPF1Q92900 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC22.59■■□□□ 1.212e-6■■■□□ 17.8
UPF1Q92900 ALG3-209ENST00000462735 704 ntTSL 222.52■■□□□ 1.23e-8■■■□□ 17.8
UPF1Q92900 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.75■□□□□ 0.433e-8■■■□□ 17.8
UPF1Q92900 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.68■□□□□ 0.423e-8■■■□□ 17.8
UPF1Q92900 ALG3-210ENST00000463495 347 ntTSL 315.99■□□□□ 0.153e-8■■■□□ 17.8
UPF1Q92900 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.063e-8■■■□□ 17.8
UPF1Q92900 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.162e-6■■■□□ 17.8
UPF1Q92900 FBXL18-204ENST00000458142 2686 ntTSL 213□□□□□ -0.333e-8■■■□□ 17.8
UPF1Q92900 HOXB3-213ENST00000552000 466 ntTSL 38.63□□□□□ -1.032e-6■■■□□ 17.8
UPF1Q92900 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.542e-7■■■□□ 17.8
UPF1Q92900 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.694e-6■■■□□ 17.8
UPF1Q92900 STAT6-222ENST00000557563 871 ntTSL 228.08■■■□□ 2.094e-6■■■□□ 17.8
UPF1Q92900 CNOT9-203ENST00000418808 907 ntTSL 311.44□□□□□ -0.581e-6■■■□□ 17.8
UPF1Q92900 STAT6-205ENST00000543873 3119 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.64e-6■■■□□ 17.8
UPF1Q92900 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC10.7□□□□□ -0.72e-27■■■□□ 17.8
UPF1Q92900 RDH11-201ENST00000381346 2588 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.792e-27■■■□□ 17.8
UPF1Q92900 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC9.1□□□□□ -0.952e-27■■■□□ 17.8
UPF1Q92900 AL049779.1-203ENST00000554493 364 ntTSL 27.71□□□□□ -1.182e-27■■■□□ 17.8
UPF1Q92900 AL049779.1-202ENST00000553582 498 ntTSL 27.29□□□□□ -1.242e-27■■■□□ 17.8
UPF1Q92900 RDH11-204ENST00000553578 4035 ntTSL 1 (best)5.73□□□□□ -1.492e-27■■■□□ 17.8
UPF1Q92900 AL049779.1-204ENST00000557564 274 ntAPPRIS P1 TSL 20.55□□□□□ -2.322e-27■■■□□ 17.8
UPF1Q92900 MYO1D-205ENST00000577576 581 ntTSL 324.62■■□□□ 1.534e-20■■■□□ 17.8
UPF1Q92900 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC33.98■■■■□ 3.031e-6■■■□□ 17.8
UPF1Q92900 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC27.43■■□□□ 1.981e-6■■■□□ 17.8
UPF1Q92900 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC27.39■■□□□ 1.971e-6■■■□□ 17.8
UPF1Q92900 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC25.31■■□□□ 1.641e-6■■■□□ 17.8
UPF1Q92900 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC19.63■□□□□ 0.733e-8■■■□□ 17.8
UPF1Q92900 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.221e-6■■■□□ 17.8
UPF1Q92900 TSPAN3-209ENST00000560715 2892 ntTSL 28.82□□□□□ -11e-6■■■□□ 17.8
UPF1Q92900 BCL2L13-201ENST00000317582 2992 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.314e-7■■■□□ 17.8
UPF1Q92900 BCL2L13-212ENST00000498133 2662 ntTSL 212.01□□□□□ -0.494e-7■■■□□ 17.8
UPF1Q92900 TNS1-217ENST00000490566 1652 ntTSL 212.76□□□□□ -0.375e-8■■■□□ 17.7
UPF1Q92900 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.15e-8■■■□□ 17.7
UPF1Q92900 UBQLN1-206ENST00000533705 6055 ntTSL 1 (best)6.44□□□□□ -1.385e-8■■■□□ 17.7
UPF1Q92900 GRINA-204ENST00000527194 806 ntTSL 220.48■□□□□ 0.872e-7■■■□□ 17.7
UPF1Q92900 DNAJC24-202ENST00000465995 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.233e-6■■■□□ 17.7
UPF1Q92900 TXNDC12-202ENST00000469458 446 ntTSL 315.35■□□□□ 0.057e-13■■■□□ 17.7
UPF1Q92900 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.087e-13■■■□□ 17.7
UPF1Q92900 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC8.95□□□□□ -0.981e-6■■■□□ 17.7
UPF1Q92900 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.32□□□□□ -0.127e-8■■■□□ 17.7
UPF1Q92900 ZC3HAV1-202ENST00000460845 1487 ntTSL 1 (best)11.12□□□□□ -0.637e-8■■■□□ 17.7
UPF1Q92900 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.337e-8■■■□□ 17.7
UPF1Q92900 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.337e-8■■■□□ 17.7
UPF1Q92900 MAP2K3-205ENST00000477540 927 ntTSL 217.31■□□□□ 0.362e-6■■■□□ 17.7
UPF1Q92900 NDEL1-203ENST00000402554 1858 ntTSL 5 BASIC17.19■□□□□ 0.343e-7■■■□□ 17.7
UPF1Q92900 PPP1R37-204ENST00000540059 1719 ntTSL 229.42■■■□□ 2.35e-7■■■□□ 17.7
UPF1Q92900 MARK4-203ENST00000587566 553 ntTSL 522.6■■□□□ 1.215e-7■■■□□ 17.7
UPF1Q92900 PPP1R37-202ENST00000422370 5943 ntTSL 1 (best)17.56■□□□□ 0.45e-7■■■□□ 17.7
UPF1Q92900 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.125e-7■■■□□ 17.7
UPF1Q92900 URM1-206ENST00000483206 731 ntTSL 222.21■■□□□ 1.159e-9■■■□□ 17.7
UPF1Q92900 MAZ-216ENST00000616501 991 ntTSL 5 BASIC29.81■■■□□ 2.363e-7■■■□□ 17.7
UPF1Q92900 CTSB-218ENST00000530624 430 ntTSL 520.3■□□□□ 0.841e-27■■■□□ 17.7
UPF1Q92900 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.34e-6■■■□□ 17.7
UPF1Q92900 MKNK1-225ENST00000531769 567 ntTSL 418■□□□□ 0.474e-6■■■□□ 17.7
UPF1Q92900 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.214e-6■■■□□ 17.7
UPF1Q92900 MOB3C-201ENST00000271139 2800 ntTSL 1 (best) BASIC12.97□□□□□ -0.334e-6■■■□□ 17.7
Retrieved 100 of 15,879 protein–RNA pairs in 150.2 ms