RNA–Protein interactions for RNA: ENST00000553578.5

RDH11-204, Transcript of retinol dehydrogenase 11, humanhuman

TSL 1 (best)

Gene RDH11, Length 4,035 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-204ENST00000553578 AEBP2Q6ZN18 517 aaPredicted RBP12.32□□□□□ -0.44
RDH11-204ENST00000553578 CHIC1Q5VXU3 224 aa12.09□□□□□ -0.47
RDH11-204ENST00000553578 SENP3Q9H4L4 574 aaPredicted RBP10.59□□□□□ -0.71
RDH11-204ENST00000553578 PHF23Q9BUL5 403 aaPredicted RBP10.55□□□□□ -0.72
RDH11-204ENST00000553578 PLPPR3Q6T4P5 718 aa9.87□□□□□ -0.83
RDH11-204ENST00000553578 FOXD1Q16676 465 aa9.75□□□□□ -0.85
RDH11-204ENST00000553578 ADRA2BP18089 450 aa9.38□□□□□ -0.91
RDH11-204ENST00000553578 PPP6R1Q9UPN7 881 aa9.34□□□□□ -0.92
RDH11-204ENST00000553578 PIAS4Q8N2W9 510 aaPredicted RBP9.28□□□□□ -0.92
RDH11-204ENST00000553578 MSH5O43196 834 aa9.08□□□□□ -0.96
RDH11-204ENST00000553578 SCAF1Q9H7N4 1312 aaKnown RBP8.71□□□□□ -1.01
RDH11-204ENST00000553578 PPP4R3CPQ6ZMV5 832 aa8.68□□□□□ -1.02
RDH11-204ENST00000553578 NISCHQ9Y2I1 1504 aa8.59□□□□□ -1.03
RDH11-204ENST00000553578 NCBP3Q53F19 620 aaKnown RBP8.53□□□□□ -1.04
RDH11-204ENST00000553578 MAPK8IP2Q13387 824 aaPredicted RBP8.5□□□□□ -1.05
RDH11-204ENST00000553578 CNKSR2Q8WXI2 1034 aa8.45□□□□□ -1.06
RDH11-204ENST00000553578 KCNA4P22459 653 aa8.43□□□□□ -1.06
RDH11-204ENST00000553578 DMRT2Q9Y5R5 561 aa8.4□□□□□ -1.07
RDH11-204ENST00000553578 NPM3O75607 178 aaKnown RBP8.29□□□□□ -1.08
RDH11-204ENST00000553578 RNF216Q9NWF9 866 aaPredicted RBP8.26□□□□□ -1.09
RDH11-204ENST00000553578 POTEDQ86YR6 584 aa8.23□□□□□ -1.09
RDH11-204ENST00000553578 DCAF8L1A6NGE4 600 aa8.19□□□□□ -1.1
RDH11-204ENST00000553578 HOXD11P31277 338 aaPredicted RBP8.19□□□□□ -1.1
RDH11-204ENST00000553578 EHMT2Q96KQ7 1210 aa8.11□□□□□ -1.11
RDH11-204ENST00000553578 SLC4A1APQ9BWU0 796 aaKnown RBP8.09□□□□□ -1.11
RDH11-204ENST00000553578 DNAJC5BQ9UF47 199 aa7.96□□□□□ -1.13
RDH11-204ENST00000553578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.95□□□□□ -1.14
RDH11-204ENST00000553578 FOXD4L1Q9NU39 408 aa7.81□□□□□ -1.16
RDH11-204ENST00000553578 SLC4A2P04920 1241 aa7.78□□□□□ -1.16
RDH11-204ENST00000553578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.72□□□□□ -1.17
RDH11-204ENST00000553578 HNRNPUL2Q1KMD3 747 aaKnown RBP7.72□□□□□ -1.17
RDH11-204ENST00000553578 MYCNP04198 464 aaPredicted RBP7.72□□□□□ -1.17
RDH11-204ENST00000553578 RNF39Q9H2S5 420 aa7.71□□□□□ -1.18
RDH11-204ENST00000553578 U3KPZ7 1027 aaPredicted RBP7.69□□□□□ -1.18
RDH11-204ENST00000553578 APLP2Q06481 763 aa7.69□□□□□ -1.18
RDH11-204ENST00000553578 CCDC180Q9P1Z9 1646 aa7.68□□□□□ -1.18
RDH11-204ENST00000553578 C1QBPQ07021 282 aaKnown RBP7.68□□□□□ -1.18
RDH11-204ENST00000553578 ZBTB22O15209 634 aa7.68□□□□□ -1.18
RDH11-204ENST00000553578 CSRNP3Q8WYN3 585 aa7.67□□□□□ -1.18
RDH11-204ENST00000553578 SAMD1Q6SPF0 538 aaPredicted RBP7.67□□□□□ -1.18
RDH11-204ENST00000553578 CACNB1Q02641 598 aaPredicted RBP7.64□□□□□ -1.19
RDH11-204ENST00000553578 CAPN15O75808 1086 aa7.58□□□□□ -1.2
RDH11-204ENST00000553578 SLC24A1O60721 1099 aa7.56□□□□□ -1.2
RDH11-204ENST00000553578 TRHP20396 242 aaPredicted RBP7.53□□□□□ -1.2
RDH11-204ENST00000553578 ATXN8OSP0DMR3 200 aa7.52□□□□□ -1.21
RDH11-204ENST00000553578 ZNF219Q9P2Y4 722 aaPredicted RBP7.51□□□□□ -1.21
RDH11-204ENST00000553578 SPINK5Q9NQ38 1064 aaPredicted RBP7.5□□□□□ -1.21
RDH11-204ENST00000553578 ATF5Q9Y2D1 282 aaPredicted RBP7.4□□□□□ -1.22
RDH11-204ENST00000553578 ABCB7O75027 752 aa7.39□□□□□ -1.23
RDH11-204ENST00000553578 DCAF1Q9Y4B6 1507 aa7.38□□□□□ -1.23
RDH11-204ENST00000553578 POLA2Q14181 598 aa7.36□□□□□ -1.23
RDH11-204ENST00000553578 DSG3P32926 999 aa7.34□□□□□ -1.24
RDH11-204ENST00000553578 MYO15BQ96JP2 1530 aa7.31□□□□□ -1.24
RDH11-204ENST00000553578 ZCCHC6Q5VYS8 1495 aaKnown RBP7.3□□□□□ -1.24
RDH11-204ENST00000553578 ZBTB12Q9Y330 459 aaPredicted RBP7.3□□□□□ -1.24
RDH11-204ENST00000553578 FBLN2P98095 1184 aa7.28□□□□□ -1.24
RDH11-204ENST00000553578 DCAF8L2P0C7V8 631 aa7.15□□□□□ -1.26
RDH11-204ENST00000553578 RTN4Q9NQC3 1192 aaKnown RBP7.14□□□□□ -1.27
RDH11-204ENST00000553578 RBM42Q9BTD8 480 aaKnown RBP7.11□□□□□ -1.27
RDH11-204ENST00000553578 OSCARQ8IYS5 282 aa7.1□□□□□ -1.27
RDH11-204ENST00000553578 MKRN4PQ13434 485 aaPredicted RBP7.08□□□□□ -1.28
RDH11-204ENST00000553578 SPDYE2BA6NHP3 402 aa7.05□□□□□ -1.28
RDH11-204ENST00000553578 SPDYE6P0CI01 402 aa7.05□□□□□ -1.28
RDH11-204ENST00000553578 SPDYE2Q495Y8 402 aa7.05□□□□□ -1.28
RDH11-204ENST00000553578 PELP1Q8IZL8 1130 aaKnown RBP7.05□□□□□ -1.28
RDH11-204ENST00000553578 ZNF692Q9BU19 519 aaPredicted RBP7.05□□□□□ -1.28
RDH11-204ENST00000553578 SPDYE4A6NLX3 237 aa7.03□□□□□ -1.28
RDH11-204ENST00000553578 FKBP8Q14318 412 aa7.03□□□□□ -1.28
RDH11-204ENST00000553578 NACADO15069 1562 aa7.01□□□□□ -1.29
RDH11-204ENST00000553578 MYT1Q01538 1121 aa6.98□□□□□ -1.29
RDH11-204ENST00000553578 AKT1S1Q96B36 256 aa6.96□□□□□ -1.29
RDH11-204ENST00000553578 AMER1Q5JTC6 1135 aaPredicted RBP6.94□□□□□ -1.3
RDH11-204ENST00000553578 PABPN1Q86U42 306 aaKnown RBP eCLIP6.93□□□□□ -1.3
RDH11-204ENST00000553578 SSUH2Q9Y2M2 353 aa6.92□□□□□ -1.3
RDH11-204ENST00000553578 TTBK1Q5TCY1 1321 aaPredicted RBP6.92□□□□□ -1.3
RDH11-204ENST00000553578 SPDYE1Q8NFV5 336 aaPredicted RBP6.88□□□□□ -1.31
RDH11-204ENST00000553578 CLEC11AQ9Y240 323 aa6.88□□□□□ -1.31
RDH11-204ENST00000553578 REM2Q8IYK8 340 aaPredicted RBP6.87□□□□□ -1.31
RDH11-204ENST00000553578 STAG3Q9UJ98 1225 aa6.86□□□□□ -1.31
RDH11-204ENST00000553578 ABCC9O60706 1549 aa6.86□□□□□ -1.31
RDH11-204ENST00000553578 SHROOM4Q9ULL8 1493 aa6.86□□□□□ -1.31
RDH11-204ENST00000553578 PRKCSHP14314 528 aaPredicted RBP6.85□□□□□ -1.31
RDH11-204ENST00000553578 FBXO3Q9UK99 471 aa6.84□□□□□ -1.32
RDH11-204ENST00000553578 RB1CC1Q8TDY2 1594 aa6.83□□□□□ -1.32
RDH11-204ENST00000553578 UNC13AQ9UPW8 1703 aa6.82□□□□□ -1.32
RDH11-204ENST00000553578 HAP1P54257 671 aaPredicted RBP6.82□□□□□ -1.32
RDH11-204ENST00000553578 PRR29P0C7W0 189 aa6.79□□□□□ -1.32
RDH11-204ENST00000553578 PITPNM1O00562 1244 aa6.78□□□□□ -1.32
RDH11-204ENST00000553578 PLEKHG5O94827 1062 aa6.78□□□□□ -1.32
RDH11-204ENST00000553578 PROM2Q8N271 834 aa6.78□□□□□ -1.32
RDH11-204ENST00000553578 CHRDL2Q6WN34 429 aa6.77□□□□□ -1.33
RDH11-204ENST00000553578 PLCD3Q8N3E9 789 aa6.74□□□□□ -1.33
RDH11-204ENST00000553578 PEG3Q9GZU2 1588 aa6.74□□□□□ -1.33
RDH11-204ENST00000553578 MIER1Q8N108 512 aa6.73□□□□□ -1.33
RDH11-204ENST00000553578 DAXXQ9UER7 740 aaPredicted RBP6.73□□□□□ -1.33
RDH11-204ENST00000553578 RANGAP1P46060 587 aaPredicted RBP6.7□□□□□ -1.34
RDH11-204ENST00000553578 BICRAQ9NZM4 1560 aa6.7□□□□□ -1.34
RDH11-204ENST00000553578 KLHL34Q8N239 644 aa6.68□□□□□ -1.34
RDH11-204ENST00000553578 VASPP50552 380 aaPredicted RBP6.67□□□□□ -1.34
RDH11-204ENST00000553578 TPRNQ4KMQ1 711 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms