RNA–Protein interactions for RNA: ENST00000552000.2

HOXB3-213, Transcript of homeobox B3, humanhuman

TSL 3

Gene HOXB3, Length 466 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-213ENST00000552000 AEBP2Q6ZN18 517 aaPredicted RBP20.06■□□□□ 0.8
HOXB3-213ENST00000552000 CHIC1Q5VXU3 224 aa18.8■□□□□ 0.6
HOXB3-213ENST00000552000 SENP3Q9H4L4 574 aaPredicted RBP17.2■□□□□ 0.34
HOXB3-213ENST00000552000 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.29
HOXB3-213ENST00000552000 FOXD1Q16676 465 aa16.07■□□□□ 0.16
HOXB3-213ENST00000552000 POTEDQ86YR6 584 aa15.72■□□□□ 0.11
HOXB3-213ENST00000552000 MSH5O43196 834 aa15.19■□□□□ 0.02
HOXB3-213ENST00000552000 PIAS4Q8N2W9 510 aaPredicted RBP14.95□□□□□ -0.02
HOXB3-213ENST00000552000 PLPPR3Q6T4P5 718 aa14.84□□□□□ -0.03
HOXB3-213ENST00000552000 PPP6R1Q9UPN7 881 aa14.67□□□□□ -0.06
HOXB3-213ENST00000552000 ADRA2BP18089 450 aa14.64□□□□□ -0.07
HOXB3-213ENST00000552000 NISCHQ9Y2I1 1504 aa13.78□□□□□ -0.2
HOXB3-213ENST00000552000 MAPK8IP2Q13387 824 aaPredicted RBP13.56□□□□□ -0.24
HOXB3-213ENST00000552000 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
HOXB3-213ENST00000552000 SCAF1Q9H7N4 1312 aaKnown RBP13.5□□□□□ -0.25
HOXB3-213ENST00000552000 CACNB1Q02641 598 aaPredicted RBP13.37□□□□□ -0.27
HOXB3-213ENST00000552000 DCAF8L1A6NGE4 600 aa13.12□□□□□ -0.31
HOXB3-213ENST00000552000 PPP4R3CPQ6ZMV5 832 aa12.94□□□□□ -0.34
HOXB3-213ENST00000552000 RNF39Q9H2S5 420 aa12.94□□□□□ -0.34
HOXB3-213ENST00000552000 HOXD11P31277 338 aaPredicted RBP12.9□□□□□ -0.34
HOXB3-213ENST00000552000 ABCC9O60706 1549 aa12.82□□□□□ -0.36
HOXB3-213ENST00000552000 CNKSR2Q8WXI2 1034 aa12.79□□□□□ -0.36
HOXB3-213ENST00000552000 RNF216Q9NWF9 866 aaPredicted RBP12.75□□□□□ -0.37
HOXB3-213ENST00000552000 C1QBPQ07021 282 aaKnown RBP12.7□□□□□ -0.38
HOXB3-213ENST00000552000 DNAJC5BQ9UF47 199 aa12.53□□□□□ -0.4
HOXB3-213ENST00000552000 CCDC180Q9P1Z9 1646 aa12.47□□□□□ -0.41
HOXB3-213ENST00000552000 NCBP3Q53F19 620 aaKnown RBP12.42□□□□□ -0.42
HOXB3-213ENST00000552000 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.38□□□□□ -0.43
HOXB3-213ENST00000552000 POTEHQ6S545 545 aa12.21□□□□□ -0.45
HOXB3-213ENST00000552000 NPM3O75607 178 aaKnown RBP12.14□□□□□ -0.47
HOXB3-213ENST00000552000 RB1CC1Q8TDY2 1594 aa12.02□□□□□ -0.49
HOXB3-213ENST00000552000 CAPN15O75808 1086 aa12.02□□□□□ -0.49
HOXB3-213ENST00000552000 U3KPZ7 1027 aaPredicted RBP12□□□□□ -0.49
HOXB3-213ENST00000552000 DSG3P32926 999 aa11.96□□□□□ -0.49
HOXB3-213ENST00000552000 SPINK5Q9NQ38 1064 aaPredicted RBP11.94□□□□□ -0.5
HOXB3-213ENST00000552000 PABPN1Q86U42 306 aaKnown RBP eCLIP11.91□□□□□ -0.5
HOXB3-213ENST00000552000 NACADO15069 1562 aa11.86□□□□□ -0.51
HOXB3-213ENST00000552000 DCAF8L2P0C7V8 631 aa11.83□□□□□ -0.52
HOXB3-213ENST00000552000 UNC13AQ9UPW8 1703 aa11.78□□□□□ -0.52
HOXB3-213ENST00000552000 APLP2Q06481 763 aa11.78□□□□□ -0.52
HOXB3-213ENST00000552000 TRHP20396 242 aaPredicted RBP11.73□□□□□ -0.53
HOXB3-213ENST00000552000 ZNF219Q9P2Y4 722 aaPredicted RBP11.71□□□□□ -0.53
HOXB3-213ENST00000552000 BICRAQ9NZM4 1560 aa11.7□□□□□ -0.54
HOXB3-213ENST00000552000 ABCB7O75027 752 aa11.67□□□□□ -0.54
HOXB3-213ENST00000552000 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.65□□□□□ -0.54
HOXB3-213ENST00000552000 HNRNPUL2Q1KMD3 747 aaKnown RBP11.65□□□□□ -0.54
HOXB3-213ENST00000552000 SLC4A2P04920 1241 aa11.64□□□□□ -0.55
HOXB3-213ENST00000552000 KCNA4P22459 653 aa11.6□□□□□ -0.55
HOXB3-213ENST00000552000 MYO15BQ96JP2 1530 aa11.57□□□□□ -0.56
HOXB3-213ENST00000552000 CECR2Q9BXF3 1484 aa11.56□□□□□ -0.56
HOXB3-213ENST00000552000 CC2D2AQ9P2K1 1620 aa11.54□□□□□ -0.56
HOXB3-213ENST00000552000 SAMD1Q6SPF0 538 aaPredicted RBP11.54□□□□□ -0.56
HOXB3-213ENST00000552000 RBM42Q9BTD8 480 aaKnown RBP11.5□□□□□ -0.57
HOXB3-213ENST00000552000 DNAJC5Q9H3Z4 198 aa11.49□□□□□ -0.57
HOXB3-213ENST00000552000 SHROOM4Q9ULL8 1493 aa11.46□□□□□ -0.57
HOXB3-213ENST00000552000 EIF4G1Q04637 1599 aaKnown RBP11.43□□□□□ -0.58
HOXB3-213ENST00000552000 SCRIBQ14160 1630 aa11.39□□□□□ -0.59
HOXB3-213ENST00000552000 CHRDL2Q6WN34 429 aa11.36□□□□□ -0.59
HOXB3-213ENST00000552000 ZCCHC6Q5VYS8 1495 aaKnown RBP11.35□□□□□ -0.59
HOXB3-213ENST00000552000 DCAF1Q9Y4B6 1507 aa11.33□□□□□ -0.6
HOXB3-213ENST00000552000 MYCNP04198 464 aaPredicted RBP11.3□□□□□ -0.6
HOXB3-213ENST00000552000 POLA2Q14181 598 aa11.3□□□□□ -0.6
HOXB3-213ENST00000552000 SP7Q8TDD2 431 aaPredicted RBP11.2□□□□□ -0.62
HOXB3-213ENST00000552000 CUX2O14529 1486 aa11.12□□□□□ -0.63
HOXB3-213ENST00000552000 AKT1S1Q96B36 256 aa11.11□□□□□ -0.63
HOXB3-213ENST00000552000 ZBTB12Q9Y330 459 aaPredicted RBP11.11□□□□□ -0.63
HOXB3-213ENST00000552000 ERCC6Q03468 1493 aa11.08□□□□□ -0.64
HOXB3-213ENST00000552000 PIP4P2Q8N4L2 257 aa10.99□□□□□ -0.65
HOXB3-213ENST00000552000 REM2Q8IYK8 340 aaPredicted RBP10.98□□□□□ -0.65
HOXB3-213ENST00000552000 FOXD4L1Q9NU39 408 aa10.98□□□□□ -0.65
HOXB3-213ENST00000552000 NCAPD3P42695 1498 aa10.96□□□□□ -0.65
HOXB3-213ENST00000552000 OSCARQ8IYS5 282 aa10.96□□□□□ -0.65
HOXB3-213ENST00000552000 ATF5Q9Y2D1 282 aaPredicted RBP10.96□□□□□ -0.65
HOXB3-213ENST00000552000 SLC4A1APQ9BWU0 796 aaKnown RBP10.94□□□□□ -0.66
HOXB3-213ENST00000552000 HAX1O00165 279 aa10.93□□□□□ -0.66
HOXB3-213ENST00000552000 NESP48681 1621 aa10.93□□□□□ -0.66
HOXB3-213ENST00000552000 TRIM41Q8WV44 630 aa10.91□□□□□ -0.66
HOXB3-213ENST00000552000 ATAD2BQ9ULI0 1458 aa10.9□□□□□ -0.66
HOXB3-213ENST00000552000 PITPNM1O00562 1244 aa10.87□□□□□ -0.67
HOXB3-213ENST00000552000 HMGXB3Q12766 1538 aa10.85□□□□□ -0.67
HOXB3-213ENST00000552000 FXR2P51116 673 aaKnown RBP eCLIP10.85□□□□□ -0.67
HOXB3-213ENST00000552000 SMARCA2P51531 1590 aa10.85□□□□□ -0.67
HOXB3-213ENST00000552000 THOC2Q8NI27 1593 aaKnown RBP10.84□□□□□ -0.67
HOXB3-213ENST00000552000 SMARCA4P51532 1647 aa10.81□□□□□ -0.68
HOXB3-213ENST00000552000 EVX2Q03828 476 aa10.79□□□□□ -0.68
HOXB3-213ENST00000552000 BAZ1BQ9UIG0 1483 aaKnown RBP10.79□□□□□ -0.68
HOXB3-213ENST00000552000 KIF21AQ7Z4S6 1674 aa10.77□□□□□ -0.69
HOXB3-213ENST00000552000 LAMC3Q9Y6N6 1575 aa10.75□□□□□ -0.69
HOXB3-213ENST00000552000 PDS5BQ9NTI5 1447 aa10.72□□□□□ -0.69
HOXB3-213ENST00000552000 BAZ1AQ9NRL2 1556 aaPredicted RBP10.7□□□□□ -0.7
HOXB3-213ENST00000552000 SPDYE2BA6NHP3 402 aa10.7□□□□□ -0.7
HOXB3-213ENST00000552000 SPDYE6P0CI01 402 aa10.7□□□□□ -0.7
HOXB3-213ENST00000552000 FBLN2P98095 1184 aa10.7□□□□□ -0.7
HOXB3-213ENST00000552000 SPDYE2Q495Y8 402 aa10.7□□□□□ -0.7
HOXB3-213ENST00000552000 PEG3Q9GZU2 1588 aa10.68□□□□□ -0.7
HOXB3-213ENST00000552000 ATXN8OSP0DMR3 200 aa10.66□□□□□ -0.7
HOXB3-213ENST00000552000 MRC2Q9UBG0 1479 aa10.65□□□□□ -0.7
HOXB3-213ENST00000552000 CLEC11AQ9Y240 323 aa10.64□□□□□ -0.71
HOXB3-213ENST00000552000 CADPSQ9ULU8 1353 aa10.64□□□□□ -0.71
HOXB3-213ENST00000552000 MROH2BQ7Z745 1585 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms