RNA–Protein interactions for RNA: ENST00000381346.8

RDH11-201, Transcript of retinol dehydrogenase 11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RDH11, Length 2,588 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-201ENST00000381346 NISCHQ9Y2I1 1504 aa18.49■□□□□ 0.55
RDH11-201ENST00000381346 CCDC180Q9P1Z9 1646 aa15.96■□□□□ 0.14
RDH11-201ENST00000381346 POTEDQ86YR6 584 aa15.74■□□□□ 0.11
RDH11-201ENST00000381346 PELP1Q8IZL8 1130 aaKnown RBP15.69■□□□□ 0.1
RDH11-201ENST00000381346 ZCCHC6Q5VYS8 1495 aaKnown RBP15.61■□□□□ 0.09
RDH11-201ENST00000381346 HRCP23327 699 aa15.37■□□□□ 0.05
RDH11-201ENST00000381346 SHROOM4Q9ULL8 1493 aa15.33■□□□□ 0.04
RDH11-201ENST00000381346 DCAF1Q9Y4B6 1507 aa15.29■□□□□ 0.04
RDH11-201ENST00000381346 MYT1Q01538 1121 aa15.29■□□□□ 0.04
RDH11-201ENST00000381346 DCAF8L2P0C7V8 631 aa15.15■□□□□ 0.02
RDH11-201ENST00000381346 MYO15BQ96JP2 1530 aa14.98□□□□□ -0.01
RDH11-201ENST00000381346 SUPT5HO00267 1087 aaKnown RBP14.92□□□□□ -0.02
RDH11-201ENST00000381346 PPARGC1BQ86YN6 1023 aaKnown RBP14.87□□□□□ -0.03
RDH11-201ENST00000381346 ABCC9O60706 1549 aa14.82□□□□□ -0.04
RDH11-201ENST00000381346 NACADO15069 1562 aa14.78□□□□□ -0.04
RDH11-201ENST00000381346 PCGF6Q9BYE7 350 aa14.75□□□□□ -0.05
RDH11-201ENST00000381346 SCRIBQ14160 1630 aa14.74□□□□□ -0.05
RDH11-201ENST00000381346 SCAF1Q9H7N4 1312 aaKnown RBP14.72□□□□□ -0.05
RDH11-201ENST00000381346 RB1CC1Q8TDY2 1594 aa14.57□□□□□ -0.08
RDH11-201ENST00000381346 TTBK1Q5TCY1 1321 aaPredicted RBP14.5□□□□□ -0.09
RDH11-201ENST00000381346 RSF1Q96T23 1441 aaPredicted RBP14.48□□□□□ -0.09
RDH11-201ENST00000381346 CHIC1Q5VXU3 224 aa14.46□□□□□ -0.09
RDH11-201ENST00000381346 ZEB1P37275 1124 aaPredicted RBP14.4□□□□□ -0.1
RDH11-201ENST00000381346 DNAJC5BQ9UF47 199 aa14.36□□□□□ -0.11
RDH11-201ENST00000381346 CECR2Q9BXF3 1484 aa14.35□□□□□ -0.11
RDH11-201ENST00000381346 UNC13AQ9UPW8 1703 aa14.32□□□□□ -0.12
RDH11-201ENST00000381346 MROH2BQ7Z745 1585 aa14.31□□□□□ -0.12
RDH11-201ENST00000381346 ACIN1Q9UKV3 1341 aaKnown RBP14.3□□□□□ -0.12
RDH11-201ENST00000381346 TRIM26Q12899 539 aaPredicted RBP14.26□□□□□ -0.13
RDH11-201ENST00000381346 BAZ1AQ9NRL2 1556 aaPredicted RBP14.25□□□□□ -0.13
RDH11-201ENST00000381346 WIZO95785 1651 aa14.21□□□□□ -0.13
RDH11-201ENST00000381346 NEUROD1Q13562 356 aa14.16□□□□□ -0.14
RDH11-201ENST00000381346 DNAJC5Q9H3Z4 198 aa14.16□□□□□ -0.14
RDH11-201ENST00000381346 GTF3C3Q9Y5Q9 886 aa14.16□□□□□ -0.14
RDH11-201ENST00000381346 BICRAQ9NZM4 1560 aa14.15□□□□□ -0.14
RDH11-201ENST00000381346 SMARCA4P51532 1647 aa14.15□□□□□ -0.15
RDH11-201ENST00000381346 CENPBP07199 599 aaPredicted RBP14.12□□□□□ -0.15
RDH11-201ENST00000381346 TOP2AP11388 1531 aaKnown RBP14.06□□□□□ -0.16
RDH11-201ENST00000381346 PABPN1Q86U42 306 aaKnown RBP eCLIP14.02□□□□□ -0.16
RDH11-201ENST00000381346 BCL11AQ9H165 835 aa14□□□□□ -0.17
RDH11-201ENST00000381346 TRIM41Q8WV44 630 aa13.99□□□□□ -0.17
RDH11-201ENST00000381346 EIF4G1Q04637 1599 aaKnown RBP13.99□□□□□ -0.17
RDH11-201ENST00000381346 PEG3Q9GZU2 1588 aa13.97□□□□□ -0.17
RDH11-201ENST00000381346 SMARCA2P51531 1590 aa13.95□□□□□ -0.18
RDH11-201ENST00000381346 CCDC88BA6NC98 1476 aa13.93□□□□□ -0.18
RDH11-201ENST00000381346 LOC105371045A0A1W2PR82 267 aa13.93□□□□□ -0.18
RDH11-201ENST00000381346 FAM9AQ8IZU1 332 aaPredicted RBP13.83□□□□□ -0.19
RDH11-201ENST00000381346 ATAD2BQ9ULI0 1458 aa13.83□□□□□ -0.2
RDH11-201ENST00000381346 DIEXFQ68CQ4 756 aaKnown RBP13.79□□□□□ -0.2
RDH11-201ENST00000381346 PRKCSHP14314 528 aaPredicted RBP13.77□□□□□ -0.21
RDH11-201ENST00000381346 ANP32EQ9BTT0 268 aa13.77□□□□□ -0.21
RDH11-201ENST00000381346 BAZ1BQ9UIG0 1483 aaKnown RBP13.76□□□□□ -0.21
RDH11-201ENST00000381346 ABCC8Q09428 1581 aa13.75□□□□□ -0.21
RDH11-201ENST00000381346 ERICH6Q7L0X2 663 aa13.66□□□□□ -0.22
RDH11-201ENST00000381346 HMGXB3Q12766 1538 aa13.66□□□□□ -0.22
RDH11-201ENST00000381346 NCAPD3P42695 1498 aa13.64□□□□□ -0.23
RDH11-201ENST00000381346 WRNQ14191 1432 aaPredicted RBP eCLIP13.62□□□□□ -0.23
RDH11-201ENST00000381346 EEA1Q15075 1411 aa13.6□□□□□ -0.23
RDH11-201ENST00000381346 SOGA1O94964 1423 aa13.57□□□□□ -0.24
RDH11-201ENST00000381346 SYNJ1O43426 1573 aa13.56□□□□□ -0.24
RDH11-201ENST00000381346 CCER1Q8TC90 406 aaPredicted RBP13.55□□□□□ -0.24
RDH11-201ENST00000381346 CSRNP3Q8WYN3 585 aa13.54□□□□□ -0.24
RDH11-201ENST00000381346 EHMT2Q96KQ7 1210 aa13.54□□□□□ -0.24
RDH11-201ENST00000381346 CLSPNQ9HAW4 1339 aa13.53□□□□□ -0.24
RDH11-201ENST00000381346 YTHDC1Q96MU7 727 aaKnown RBP13.51□□□□□ -0.25
RDH11-201ENST00000381346 CC2D2AQ9P2K1 1620 aa13.5□□□□□ -0.25
RDH11-201ENST00000381346 RUSC2Q8N2Y8 1516 aa13.5□□□□□ -0.25
RDH11-201ENST00000381346 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.48□□□□□ -0.25
RDH11-201ENST00000381346 TOP2BQ02880 1626 aa13.47□□□□□ -0.25
RDH11-201ENST00000381346 TNIKQ9UKE5 1360 aa13.46□□□□□ -0.26
RDH11-201ENST00000381346 BIVM-ERCC5R4GMW8 1640 aa13.45□□□□□ -0.26
RDH11-201ENST00000381346 ZNF316A6NFI3 1004 aaPredicted RBP13.45□□□□□ -0.26
RDH11-201ENST00000381346 TSHZ2Q9NRE2 1034 aa13.45□□□□□ -0.26
RDH11-201ENST00000381346 CFTRP13569 1480 aa13.44□□□□□ -0.26
RDH11-201ENST00000381346 APLP2Q06481 763 aa13.44□□□□□ -0.26
RDH11-201ENST00000381346 GOLGA3Q08378 1498 aa13.43□□□□□ -0.26
RDH11-201ENST00000381346 CEP162Q5TB80 1403 aa13.41□□□□□ -0.26
RDH11-201ENST00000381346 KIF21BO75037 1637 aa13.41□□□□□ -0.26
RDH11-201ENST00000381346 PRDM2Q13029 1718 aa13.4□□□□□ -0.26
RDH11-201ENST00000381346 CEP164Q9UPV0 1460 aa13.4□□□□□ -0.26
RDH11-201ENST00000381346 SUPT16HQ9Y5B9 1047 aaKnown RBP13.38□□□□□ -0.27
RDH11-201ENST00000381346 CUX1P39880 1505 aa13.35□□□□□ -0.27
RDH11-201ENST00000381346 MIER1Q8N108 512 aa13.35□□□□□ -0.27
RDH11-201ENST00000381346 UBTFP17480 764 aaKnown RBP13.34□□□□□ -0.27
RDH11-201ENST00000381346 CADPSQ9ULU8 1353 aa13.32□□□□□ -0.28
RDH11-201ENST00000381346 CUX2O14529 1486 aa13.31□□□□□ -0.28
RDH11-201ENST00000381346 RAPGEF2Q9Y4G8 1499 aa13.28□□□□□ -0.28
RDH11-201ENST00000381346 ERICH3Q5RHP9 1530 aa13.26□□□□□ -0.29
RDH11-201ENST00000381346 PRXQ9BXM0 1461 aa13.25□□□□□ -0.29
RDH11-201ENST00000381346 KIF27Q86VH2 1401 aa13.24□□□□□ -0.29
RDH11-201ENST00000381346 CLIP1P30622 1438 aa13.23□□□□□ -0.29
RDH11-201ENST00000381346 FANCD2Q9BXW9 1451 aa13.18□□□□□ -0.3
RDH11-201ENST00000381346 VPS8Q8N3P4 1428 aa13.17□□□□□ -0.3
RDH11-201ENST00000381346 FGD5Q6ZNL6 1462 aa13.15□□□□□ -0.3
RDH11-201ENST00000381346 MYT1LQ9UL68 1186 aa13.14□□□□□ -0.31
RDH11-201ENST00000381346 DNMBPQ6XZF7 1577 aa13.12□□□□□ -0.31
RDH11-201ENST00000381346 LAMC3Q9Y6N6 1575 aa13.12□□□□□ -0.31
RDH11-201ENST00000381346 NESP48681 1621 aa13.1□□□□□ -0.31
RDH11-201ENST00000381346 RBM19Q9Y4C8 960 aaKnown RBP13.1□□□□□ -0.31
RDH11-201ENST00000381346 IGF1RP08069 1367 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms