Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 HNRNPK-203ENST00000376256 562 ntTSL 27.05□□□□□ -1.284e-16■□□□□ 8.4
U2AF1Q01081 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC28.8■■■□□ 2.23e-6■□□□□ 8.4
U2AF1Q01081 AUP1-207ENST00000472800 663 ntTSL 426.26■■□□□ 1.793e-6■□□□□ 8.4
U2AF1Q01081 PSME2-218ENST00000630027 185 ntTSL 3 BASIC15.99■□□□□ 0.154e-8■□□□□ 8.4
U2AF1Q01081 COBLL1-214ENST00000460238 580 ntTSL 210.78□□□□□ -0.683e-6■□□□□ 8.4
U2AF1Q01081 MBNL3-203ENST00000370849 1444 ntTSL 2 BASIC9.88□□□□□ -0.833e-6■□□□□ 8.4
U2AF1Q01081 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC8.2□□□□□ -1.13e-6■□□□□ 8.4
U2AF1Q01081 MBNL3-208ENST00000436215 891 ntTSL 37.38□□□□□ -1.233e-6■□□□□ 8.4
U2AF1Q01081 MBNL3-209ENST00000442191 840 ntTSL 25.67□□□□□ -1.53e-6■□□□□ 8.4
U2AF1Q01081 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.513e-6■□□□□ 8.4
U2AF1Q01081 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.713e-6■□□□□ 8.4
U2AF1Q01081 MBNL3-210ENST00000465964 400 ntTSL 23.75□□□□□ -1.813e-6■□□□□ 8.4
U2AF1Q01081 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.42□□□□□ -1.863e-6■□□□□ 8.4
U2AF1Q01081 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.16□□□□□ -2.063e-6■□□□□ 8.4
U2AF1Q01081 ESYT2-202ENST00000275418 3251 ntAPPRIS ALT2 TSL 526■■□□□ 1.751e-7■□□□□ 8.3
U2AF1Q01081 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.681e-7■□□□□ 8.3
U2AF1Q01081 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.183e-7■□□□□ 8.3
U2AF1Q01081 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.161e-7■□□□□ 8.3
U2AF1Q01081 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC21.64■■□□□ 1.063e-7■□□□□ 8.3
U2AF1Q01081 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC20.12■□□□□ 0.813e-7■□□□□ 8.3
U2AF1Q01081 ESYT2-203ENST00000435514 2090 ntTSL 218.65■□□□□ 0.581e-7■□□□□ 8.3
U2AF1Q01081 MPP1-209ENST00000453245 729 ntTSL 517.27■□□□□ 0.363e-7■□□□□ 8.3
U2AF1Q01081 MPP1-208ENST00000439370 2066 ntTSL 516.57■□□□□ 0.243e-7■□□□□ 8.3
U2AF1Q01081 BTAF1-201ENST00000265990 7250 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.133e-7■□□□□ 8.3
U2AF1Q01081 BTAF1-202ENST00000471217 2003 ntTSL 1 (best)7.72□□□□□ -1.173e-7■□□□□ 8.3
U2AF1Q01081 MPP1-216ENST00000491955 2378 ntTSL 27.67□□□□□ -1.183e-7■□□□□ 8.3
U2AF1Q01081 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.633e-7■□□□□ 8.3
U2AF1Q01081 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC40.09■■■■■ 4.013e-7■□□□□ 8.3
U2AF1Q01081 HNRNPM-208ENST00000597270 1147 ntTSL 227.16■■□□□ 1.943e-7■□□□□ 8.3
U2AF1Q01081 GATA2-205ENST00000492608 844 ntTSL 325.79■■□□□ 1.721e-13■□□□□ 8.3
U2AF1Q01081 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.421e-13■□□□□ 8.3
U2AF1Q01081 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC22.59■■□□□ 1.211e-13■□□□□ 8.3
U2AF1Q01081 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC22.31■■□□□ 1.163e-7■□□□□ 8.3
U2AF1Q01081 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC20.27■□□□□ 0.843e-7■□□□□ 8.3
U2AF1Q01081 TRIP10-212ENST00000600677 2022 ntTSL 520.02■□□□□ 0.83e-7■□□□□ 8.3
U2AF1Q01081 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC19.4■□□□□ 0.73e-7■□□□□ 8.3
U2AF1Q01081 TRIP10-203ENST00000595305 2068 ntTSL 218.99■□□□□ 0.633e-7■□□□□ 8.3
U2AF1Q01081 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.271e-13■□□□□ 8.3
U2AF1Q01081 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC32.91■■■□□ 2.864e-6■□□□□ 8.3
U2AF1Q01081 TRAPPC8-213ENST00000584876 715 ntTSL 530.73■■■□□ 2.514e-6■□□□□ 8.3
U2AF1Q01081 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC30.08■■■□□ 2.414e-6■□□□□ 8.3
U2AF1Q01081 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.124e-6■□□□□ 8.3
U2AF1Q01081 ACAA1-207ENST00000440176 1328 ntTSL 228.03■■■□□ 2.084e-6■□□□□ 8.3
U2AF1Q01081 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.944e-9■□□□□ 8.3
U2AF1Q01081 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC26.18■■□□□ 1.781e-7■□□□□ 8.3
U2AF1Q01081 ACAA1-203ENST00000411549 1944 ntTSL 1 (best)26.03■■□□□ 1.764e-6■□□□□ 8.3
U2AF1Q01081 NDUFB8-208ENST00000531189 577 ntTSL 225.9■■□□□ 1.744e-6■□□□□ 8.3
U2AF1Q01081 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC25.56■■□□□ 1.684e-6■□□□□ 8.3
U2AF1Q01081 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC25.52■■□□□ 1.684e-6■□□□□ 8.3
U2AF1Q01081 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC23.86■■□□□ 1.414e-6■□□□□ 8.3
U2AF1Q01081 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC23.84■■□□□ 1.411e-7■□□□□ 8.3
U2AF1Q01081 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC23.67■■□□□ 1.381e-7■□□□□ 8.3
U2AF1Q01081 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC23.6■■□□□ 1.371e-7■□□□□ 8.3
U2AF1Q01081 ACAA1-205ENST00000421218 869 ntTSL 523.5■■□□□ 1.354e-6■□□□□ 8.3
U2AF1Q01081 NDUFB8-209ENST00000531418 585 ntTSL 323.4■■□□□ 1.344e-6■□□□□ 8.3
U2AF1Q01081 IFFO1-203ENST00000396830 1776 ntTSL 1 (best)23.35■■□□□ 1.331e-7■□□□□ 8.3
U2AF1Q01081 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.261e-7■□□□□ 8.3
U2AF1Q01081 NDUFB8-207ENST00000529437 602 ntTSL 222.58■■□□□ 1.214e-6■□□□□ 8.3
U2AF1Q01081 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC22.44■■□□□ 1.181e-7■□□□□ 8.3
U2AF1Q01081 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.024e-6■□□□□ 8.3
U2AF1Q01081 MYO18A-220ENST00000588791 650 ntTSL 521.25■□□□□ 0.994e-6■□□□□ 8.3
U2AF1Q01081 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.86■□□□□ 0.934e-6■□□□□ 8.3
U2AF1Q01081 AL133352.1-202ENST00000527595 1423 ntAPPRIS ALT2 TSL 220.75■□□□□ 0.914e-6■□□□□ 8.3
U2AF1Q01081 NDUFB8-205ENST00000466088 829 ntTSL 220.67■□□□□ 0.94e-6■□□□□ 8.3
U2AF1Q01081 NDUFB8-206ENST00000528425 608 ntTSL 420.53■□□□□ 0.884e-6■□□□□ 8.3
U2AF1Q01081 IFFO1-209ENST00000487279 2786 ntTSL 1 (best)20.51■□□□□ 0.871e-7■□□□□ 8.3
U2AF1Q01081 ACAA1-216ENST00000480865 1540 ntTSL 520.32■□□□□ 0.844e-6■□□□□ 8.3
U2AF1Q01081 AL133352.1-201ENST00000529568 1952 ntAPPRIS ALT2 TSL 219.68■□□□□ 0.744e-6■□□□□ 8.3
U2AF1Q01081 ACAA1-215ENST00000469600 876 ntTSL 219.52■□□□□ 0.724e-6■□□□□ 8.3
U2AF1Q01081 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC19.39■□□□□ 0.694e-6■□□□□ 8.3
U2AF1Q01081 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.614e-6■□□□□ 8.3
U2AF1Q01081 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.574e-6■□□□□ 8.3
U2AF1Q01081 IFFO1-208ENST00000472558 2571 ntTSL 217.4■□□□□ 0.381e-7■□□□□ 8.3
U2AF1Q01081 TRAPPC8-207ENST00000580104 5014 ntTSL 217.33■□□□□ 0.374e-6■□□□□ 8.3
U2AF1Q01081 IFFO1-207ENST00000471408 2843 ntTSL 217.32■□□□□ 0.361e-7■□□□□ 8.3
U2AF1Q01081 IFFO1-210ENST00000488007 3001 ntTSL 517.27■□□□□ 0.361e-7■□□□□ 8.3
U2AF1Q01081 MYO18A-207ENST00000530254 6479 ntTSL 1 (best)16.74■□□□□ 0.274e-6■□□□□ 8.3
U2AF1Q01081 NDUFB8-203ENST00000370322 713 ntTSL 2 BASIC16.64■□□□□ 0.254e-6■□□□□ 8.3
U2AF1Q01081 IFFO1-206ENST00000465801 2850 ntTSL 5 BASIC16.57■□□□□ 0.241e-7■□□□□ 8.3
U2AF1Q01081 KAT2A-202ENST00000465682 2990 ntTSL 516.48■□□□□ 0.234e-6■□□□□ 8.3
U2AF1Q01081 SSR1-205ENST00000475213 446 ntTSL 316.4■□□□□ 0.221e-7■□□□□ 8.3
U2AF1Q01081 AL133352.1-205ENST00000533549 582 ntAPPRIS ALT2 TSL 416.32■□□□□ 0.24e-6■□□□□ 8.3
U2AF1Q01081 ACAA1-211ENST00000452171 927 ntTSL 316.14■□□□□ 0.174e-6■□□□□ 8.3
U2AF1Q01081 IPO4-211ENST00000560155 3485 ntTSL 1 (best)15.52■□□□□ 0.074e-6■□□□□ 8.3
U2AF1Q01081 IPO4-218ENST00000561199 3249 ntTSL 215.51■□□□□ 0.074e-6■□□□□ 8.3
U2AF1Q01081 IPO4-207ENST00000558780 3540 ntTSL 215.48■□□□□ 0.074e-6■□□□□ 8.3
U2AF1Q01081 ACAA1-214ENST00000469559 4720 ntTSL 215.45■□□□□ 0.064e-6■□□□□ 8.3
U2AF1Q01081 IPO4-203ENST00000558046 3440 ntTSL 215.4■□□□□ 0.064e-6■□□□□ 8.3
U2AF1Q01081 IFFO1-205ENST00000436152 3101 ntTSL 2 BASIC15.01□□□□□ -0.011e-7■□□□□ 8.3
U2AF1Q01081 IPO4-214ENST00000560798 3581 ntTSL 214.82□□□□□ -0.044e-6■□□□□ 8.3
U2AF1Q01081 CCDC162P-209ENST00000508210 518 ntTSL 314.79□□□□□ -0.044e-6■□□□□ 8.3
U2AF1Q01081 IPO4-217ENST00000561090 3632 ntTSL 214.67□□□□□ -0.064e-6■□□□□ 8.3
U2AF1Q01081 AL136295.4-201ENST00000561419 4351 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.084e-6■□□□□ 8.3
U2AF1Q01081 CCDC162P-213ENST00000638844 2926 ntTSL 514.55□□□□□ -0.084e-6■□□□□ 8.3
U2AF1Q01081 MYO18A-209ENST00000531253 7504 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.154e-6■□□□□ 8.3
U2AF1Q01081 MYO18A-223ENST00000628822 7501 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.154e-6■□□□□ 8.3
U2AF1Q01081 IPO4-201ENST00000354464 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.224e-6■□□□□ 8.3
U2AF1Q01081 MYO18A-202ENST00000527372 9992 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.234e-6■□□□□ 8.3
U2AF1Q01081 MYO18A-214ENST00000533112 7522 ntTSL 1 (best) BASIC13.28□□□□□ -0.284e-6■□□□□ 8.3
U2AF1Q01081 IPO4-209ENST00000559588 3537 ntTSL 1 (best)13.1□□□□□ -0.314e-6■□□□□ 8.3
Retrieved 100 of 10,096 protein–RNA pairs in 41.3 ms