Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS25Q9BRG1 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS25Q9BRG1 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS25Q9BRG1 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
VPS25Q9BRG1 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
VPS25Q9BRG1 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS25Q9BRG1 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS25Q9BRG1 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC13.16□□□□□ -0.3
VPS25Q9BRG1 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
VPS25Q9BRG1 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
VPS25Q9BRG1 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC13.15□□□□□ -0.31
VPS25Q9BRG1 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
VPS25Q9BRG1 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
VPS25Q9BRG1 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC13.15□□□□□ -0.31
VPS25Q9BRG1 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
VPS25Q9BRG1 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 GNAS-203ENST00000306120 1878 ntBASIC13.13□□□□□ -0.31
VPS25Q9BRG1 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
VPS25Q9BRG1 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms