Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.93■□□□□ 0.62
PTPN4P29074 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN4P29074 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
PTPN4P29074 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
PTPN4P29074 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN4P29074 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 AC023632.3-201ENST00000521633 145 ntBASIC18.93■□□□□ 0.62
PTPN4P29074 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.93■□□□□ 0.62
PTPN4P29074 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.93■□□□□ 0.62
PTPN4P29074 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.93■□□□□ 0.62
PTPN4P29074 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
PTPN4P29074 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN4P29074 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN4P29074 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.92■□□□□ 0.62
PTPN4P29074 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.92■□□□□ 0.62
PTPN4P29074 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
PTPN4P29074 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
PTPN4P29074 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.92■□□□□ 0.62
PTPN4P29074 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.92■□□□□ 0.62
PTPN4P29074 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PTPN4P29074 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.92■□□□□ 0.62
PTPN4P29074 REXO1L12P-201ENST00000622156 912 ntBASIC18.92■□□□□ 0.62
PTPN4P29074 AL049637.2-201ENST00000641778 930 ntBASIC18.92■□□□□ 0.62
PTPN4P29074 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.92■□□□□ 0.62
PTPN4P29074 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.92■□□□□ 0.62
PTPN4P29074 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTPN4P29074 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
PTPN4P29074 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
PTPN4P29074 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.91■□□□□ 0.62
PTPN4P29074 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 KRT16P6-202ENST00000425692 1426 ntBASIC18.91■□□□□ 0.62
PTPN4P29074 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.91■□□□□ 0.62
PTPN4P29074 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.91■□□□□ 0.62
PTPN4P29074 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.91■□□□□ 0.62
PTPN4P29074 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.91■□□□□ 0.62
PTPN4P29074 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 TSPY7P-201ENST00000431358 1114 ntBASIC18.91■□□□□ 0.62
PTPN4P29074 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.91■□□□□ 0.62
PTPN4P29074 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.91■□□□□ 0.62
PTPN4P29074 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.91■□□□□ 0.62
PTPN4P29074 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.91■□□□□ 0.62
PTPN4P29074 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.91■□□□□ 0.62
PTPN4P29074 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 FP475955.4-201ENST00000623131 1990 ntBASIC18.91■□□□□ 0.62
PTPN4P29074 AC090340.1-201ENST00000620778 4980 ntBASIC18.91■□□□□ 0.62
PTPN4P29074 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTPN4P29074 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.91■□□□□ 0.62
PTPN4P29074 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
PTPN4P29074 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.9■□□□□ 0.62
PTPN4P29074 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
PTPN4P29074 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
PTPN4P29074 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.9■□□□□ 0.62
PTPN4P29074 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.9■□□□□ 0.62
PTPN4P29074 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.9■□□□□ 0.62
PTPN4P29074 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 TEX21P-204ENST00000641479 1693 ntBASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms