Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 SCFD1-201ENST00000311943 2016 ntTSL 210.74□□□□□ -0.693e-6■□□□□ 10
LSM11P83369 SCFD1-206ENST00000484733 2308 ntTSL 59.98□□□□□ -0.813e-6■□□□□ 10
LSM11P83369 SCFD1-204ENST00000463622 1943 ntTSL 27.95□□□□□ -1.143e-6■□□□□ 10
LSM11P83369 SCFD1-222ENST00000556768 1829 ntTSL 1 (best)7.62□□□□□ -1.193e-6■□□□□ 10
LSM11P83369 SCFD1-202ENST00000396629 2021 ntTSL 2 BASIC7.49□□□□□ -1.213e-6■□□□□ 10
LSM11P83369 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC7.47□□□□□ -1.213e-6■□□□□ 10
LSM11P83369 TAF1D-207ENST00000527169 1127 ntTSL 515.7■□□□□ 0.16e-6■□□□□ 10
LSM11P83369 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.016e-6■□□□□ 10
LSM11P83369 AKAP1-209ENST00000572560 442 ntTSL 314.03□□□□□ -0.166e-6■□□□□ 10
LSM11P83369 AKAP1-214ENST00000575032 570 ntTSL 312.76□□□□□ -0.376e-6■□□□□ 10
LSM11P83369 TAF1D-213ENST00000529900 1066 ntTSL 212.58□□□□□ -0.46e-6■□□□□ 10
LSM11P83369 TAF1D-214ENST00000530089 1429 ntTSL 312.19□□□□□ -0.466e-6■□□□□ 10
LSM11P83369 AKAP1-208ENST00000572557 3098 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.66e-6■□□□□ 10
LSM11P83369 AKAP1-206ENST00000571629 3105 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.626e-6■□□□□ 10
LSM11P83369 AKAP1-212ENST00000573326 1580 ntTSL 510.73□□□□□ -0.696e-6■□□□□ 10
LSM11P83369 AKAP1-219ENST00000621116 4285 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.746e-6■□□□□ 10
LSM11P83369 TAF1D-221ENST00000540232 483 ntTSL 310□□□□□ -0.816e-6■□□□□ 10
LSM11P83369 AKAP1-204ENST00000539273 3153 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.826e-6■□□□□ 10
LSM11P83369 AKAP1-203ENST00000481416 4089 ntTSL 59.44□□□□□ -0.96e-6■□□□□ 10
LSM11P83369 SLC5A9-203ENST00000438567 3195 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.52e-9■□□□□ 10
LSM11P83369 SLC5A9-206ENST00000493837 3769 ntTSL 29.45□□□□□ -0.92e-9■□□□□ 10
LSM11P83369 SLC5A9-201ENST00000236495 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.922e-9■□□□□ 10
LSM11P83369 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.415e-6■□□□□ 10
LSM11P83369 RHOT2-219ENST00000568950 1343 ntTSL 519.28■□□□□ 0.685e-7■□□□□ 10
LSM11P83369 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.52■□□□□ 0.726e-7■□□□□ 10
LSM11P83369 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.56e-7■□□□□ 10
LSM11P83369 NDRG2-210ENST00000397856 1309 ntTSL 5 BASIC10.78□□□□□ -0.683e-9■□□□□ 10
LSM11P83369 DDX39B-203ENST00000417023 561 ntTSL 511.34□□□□□ -0.598e-13■□□□□ 10
LSM11P83369 RBM39-225ENST00000465158 825 ntTSL 29.98□□□□□ -0.817e-15■□□□□ 10
LSM11P83369 TMEM94-212ENST00000579898 2596 ntTSL 213.96□□□□□ -0.178e-9■□□□□ 10
LSM11P83369 TMEM94-232ENST00000585105 5632 ntTSL 212.4□□□□□ -0.428e-9■□□□□ 10
LSM11P83369 TMEM94-217ENST00000581085 5432 ntTSL 211.41□□□□□ -0.588e-9■□□□□ 10
LSM11P83369 TMEM94-201ENST00000314256 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.618e-9■□□□□ 10
LSM11P83369 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.46■□□□□ 0.232e-7■□□□□ 10
LSM11P83369 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.54□□□□□ -0.082e-7■□□□□ 10
LSM11P83369 TRMT2A-220ENST00000494820 1098 ntTSL 513.58□□□□□ -0.241e-7■□□□□ 10
LSM11P83369 LMNA-206ENST00000368300 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.552e-7■□□□□ 10
LSM11P83369 COL18A1-205ENST00000423214 839 ntTSL 514.09□□□□□ -0.152e-8■□□□□ 10
LSM11P83369 DDX39B-220ENST00000482195 1232 ntTSL 211□□□□□ -0.651e-13■□□□□ 10
LSM11P83369 DDX39B-210ENST00000431908 914 ntTSL 510.41□□□□□ -0.741e-13■□□□□ 10
LSM11P83369 RHOT2-208ENST00000562957 397 ntTSL 28.64□□□□□ -1.033e-7■□□□□ 9.9
LSM11P83369 SLC22A31-202ENST00000562916 692 ntTSL 518.54■□□□□ 0.563e-11■□□□□ 9.9
LSM11P83369 FBXO31-204ENST00000565593 2717 ntTSL 518.97■□□□□ 0.634e-9■□□□□ 9.9
LSM11P83369 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.88■□□□□ 0.614e-9■□□□□ 9.9
LSM11P83369 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.314e-9■□□□□ 9.9
LSM11P83369 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.294e-9■□□□□ 9.9
LSM11P83369 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.715e-6■□□□□ 9.9
LSM11P83369 RAB11FIP3-203ENST00000434585 3550 ntAPPRIS ALT2 TSL 511.66□□□□□ -0.545e-6■□□□□ 9.9
LSM11P83369 RAB11FIP3-205ENST00000450428 3203 ntTSL 2 BASIC11.46□□□□□ -0.575e-6■□□□□ 9.9
LSM11P83369 MAN2C1-204ENST00000561693 1152 ntTSL 515.9■□□□□ 0.141e-7■□□□□ 9.9
LSM11P83369 MAN2C1-205ENST00000562067 710 ntTSL 511.96□□□□□ -0.491e-7■□□□□ 9.9
LSM11P83369 MAN2C1-221ENST00000564929 851 ntTSL 511.96□□□□□ -0.491e-7■□□□□ 9.9
LSM11P83369 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.62e-9■□□□□ 9.9
LSM11P83369 SLC39A5-208ENST00000447080 380 ntTSL 518.03■□□□□ 0.482e-9■□□□□ 9.9
LSM11P83369 SLC39A5-203ENST00000419232 833 ntTSL 317.76■□□□□ 0.432e-9■□□□□ 9.9
LSM11P83369 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.32e-9■□□□□ 9.9
LSM11P83369 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.67■■□□□ 1.541e-8■□□□□ 9.9
LSM11P83369 SSBP4-203ENST00000593641 900 ntTSL 519.79■□□□□ 0.761e-8■□□□□ 9.9
LSM11P83369 PDCD2-201ENST00000167218 1118 ntTSL 524.35■■□□□ 1.494e-9■□□□□ 9.9
LSM11P83369 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC23.96■■□□□ 1.434e-9■□□□□ 9.9
LSM11P83369 PDCD2-211ENST00000544336 1164 ntTSL 1 (best)23.96■■□□□ 1.434e-9■□□□□ 9.9
LSM11P83369 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.71■■□□□ 1.234e-9■□□□□ 9.9
LSM11P83369 PDCD2-214ENST00000545869 900 ntTSL 521.03■□□□□ 0.964e-9■□□□□ 9.9
LSM11P83369 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.35■□□□□ 0.694e-9■□□□□ 9.9
LSM11P83369 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.01■□□□□ 0.634e-9■□□□□ 9.9
LSM11P83369 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.59■□□□□ 0.414e-9■□□□□ 9.9
LSM11P83369 SLC29A2-204ENST00000541567 2272 ntTSL 1 (best)17.46■□□□□ 0.394e-9■□□□□ 9.9
LSM11P83369 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC16.98■□□□□ 0.314e-9■□□□□ 9.9
LSM11P83369 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.214e-9■□□□□ 9.9
LSM11P83369 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.124e-9■□□□□ 9.9
LSM11P83369 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.114e-9■□□□□ 9.9
LSM11P83369 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.14e-9■□□□□ 9.9
LSM11P83369 SLC29A2-203ENST00000540386 2474 ntTSL 1 (best)15.02■□□□□ -04e-9■□□□□ 9.9
LSM11P83369 PDCD2-207ENST00000539212 445 ntTSL 315□□□□□ -0.014e-9■□□□□ 9.9
LSM11P83369 PDCD2-213ENST00000544866 710 ntTSL 514.88□□□□□ -0.034e-9■□□□□ 9.9
LSM11P83369 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.68□□□□□ -0.064e-9■□□□□ 9.9
LSM11P83369 PDCD2-206ENST00000538195 560 ntTSL 512.89□□□□□ -0.354e-9■□□□□ 9.9
LSM11P83369 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC12.39□□□□□ -0.434e-9■□□□□ 9.9
LSM11P83369 DDX39B-216ENST00000462421 618 ntTSL 37.73□□□□□ -1.172e-10■□□□□ 9.9
LSM11P83369 EHBP1-204ENST00000405482 1311 ntTSL 219.53■□□□□ 0.723e-6■□□□□ 9.9
LSM11P83369 CHRD-215ENST00000485883 568 ntTSL 417.73■□□□□ 0.432e-7■□□□□ 9.9
LSM11P83369 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.413e-6■□□□□ 9.9
LSM11P83369 CHRD-207ENST00000459711 503 ntTSL 217.59■□□□□ 0.412e-7■□□□□ 9.9
LSM11P83369 CHRD-216ENST00000486066 546 ntTSL 416.96■□□□□ 0.312e-7■□□□□ 9.9
LSM11P83369 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.132e-7■□□□□ 9.9
LSM11P83369 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.052e-7■□□□□ 9.9
LSM11P83369 CHRD-214ENST00000482805 608 ntTSL 414.72□□□□□ -0.052e-7■□□□□ 9.9
LSM11P83369 CHRD-213ENST00000482014 560 ntTSL 414.03□□□□□ -0.162e-7■□□□□ 9.9
LSM11P83369 CHRD-210ENST00000461684 677 ntTSL 413.93□□□□□ -0.182e-7■□□□□ 9.9
LSM11P83369 EHBP1-217ENST00000472809 1374 ntTSL 513.55□□□□□ -0.243e-6■□□□□ 9.9
LSM11P83369 ACTN4-204ENST00000440400 3180 ntTSL 512.14□□□□□ -0.472e-7■□□□□ 9.9
LSM11P83369 MRPS5-207ENST00000482568 711 ntTSL 311.86□□□□□ -0.512e-7■□□□□ 9.9
LSM11P83369 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.562e-7■□□□□ 9.9
LSM11P83369 MRPS5-203ENST00000461916 793 ntTSL 211.28□□□□□ -0.62e-7■□□□□ 9.9
LSM11P83369 MYRF-201ENST00000265460 5745 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.662e-7■□□□□ 9.9
LSM11P83369 MRPS5-202ENST00000345084 1359 ntTSL 210.54□□□□□ -0.722e-7■□□□□ 9.9
LSM11P83369 EHBP1-211ENST00000449820 539 ntTSL 510.49□□□□□ -0.733e-6■□□□□ 9.9
LSM11P83369 EHBP1-205ENST00000413434 533 ntTSL 49.39□□□□□ -0.913e-6■□□□□ 9.9
LSM11P83369 EHBP1-207ENST00000426940 586 ntTSL 49.39□□□□□ -0.913e-6■□□□□ 9.9
LSM11P83369 EHBP1-201ENST00000263991 5165 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.923e-6■□□□□ 9.9
Retrieved 100 of 11,495 protein–RNA pairs in 62.1 ms