RNA–Protein interactions for RNA: ENST00000368300.8

LMNA-206, Transcript of lamin A/C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMNA, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-206ENST00000368300 NISCHQ9Y2I1 1504 aa26.36■■□□□ 1.81
LMNA-206ENST00000368300 CCDC180Q9P1Z9 1646 aa22.45■■□□□ 1.18
LMNA-206ENST00000368300 SHROOM4Q9ULL8 1493 aa22.4■■□□□ 1.18
LMNA-206ENST00000368300 DCAF8L2P0C7V8 631 aa22.24■■□□□ 1.15
LMNA-206ENST00000368300 ZCCHC6Q5VYS8 1495 aaKnown RBP22.2■■□□□ 1.14
LMNA-206ENST00000368300 SUPT5HO00267 1087 aaKnown RBP21.81■■□□□ 1.08
LMNA-206ENST00000368300 DCAF1Q9Y4B6 1507 aa21.53■■□□□ 1.04
LMNA-206ENST00000368300 ABCC9O60706 1549 aa21.36■■□□□ 1.01
LMNA-206ENST00000368300 SCRIBQ14160 1630 aa21.14■□□□□ 0.97
LMNA-206ENST00000368300 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
LMNA-206ENST00000368300 CHIC1Q5VXU3 224 aa20.95■□□□□ 0.94
LMNA-206ENST00000368300 NACADO15069 1562 aa20.92■□□□□ 0.94
LMNA-206ENST00000368300 RSF1Q96T23 1441 aaPredicted RBP20.77■□□□□ 0.92
LMNA-206ENST00000368300 RB1CC1Q8TDY2 1594 aa20.67■□□□□ 0.9
LMNA-206ENST00000368300 CECR2Q9BXF3 1484 aa20.67■□□□□ 0.9
LMNA-206ENST00000368300 MROH2BQ7Z745 1585 aa20.52■□□□□ 0.88
LMNA-206ENST00000368300 PABPN1Q86U42 306 aaKnown RBP eCLIP20.44■□□□□ 0.861e-8■□□□□ 9.4
LMNA-206ENST00000368300 LOC105371045A0A1W2PR82 267 aa20.39■□□□□ 0.85
LMNA-206ENST00000368300 WIZO95785 1651 aa20.36■□□□□ 0.85
LMNA-206ENST00000368300 UNC13AQ9UPW8 1703 aa20.3■□□□□ 0.84
LMNA-206ENST00000368300 TRIM41Q8WV44 630 aa20.29■□□□□ 0.84
LMNA-206ENST00000368300 BAZ1AQ9NRL2 1556 aaPredicted RBP20.24■□□□□ 0.83
LMNA-206ENST00000368300 FAM9AQ8IZU1 332 aaPredicted RBP20.2■□□□□ 0.82
LMNA-206ENST00000368300 BICRAQ9NZM4 1560 aa20.15■□□□□ 0.82
LMNA-206ENST00000368300 SMARCA4P51532 1647 aa20.12■□□□□ 0.81
LMNA-206ENST00000368300 EHMT2Q96KQ7 1210 aa20.11■□□□□ 0.81
LMNA-206ENST00000368300 TOP2AP11388 1531 aaKnown RBP19.99■□□□□ 0.79
LMNA-206ENST00000368300 CCDC88BA6NC98 1476 aa19.98■□□□□ 0.79
LMNA-206ENST00000368300 PCGF6Q9BYE7 350 aa19.97■□□□□ 0.79
LMNA-206ENST00000368300 SMARCA2P51531 1590 aa19.89■□□□□ 0.77
LMNA-206ENST00000368300 EIF4G1Q04637 1599 aaKnown RBP19.82■□□□□ 0.76
LMNA-206ENST00000368300 ABCC8Q09428 1581 aa19.81■□□□□ 0.76
LMNA-206ENST00000368300 ATAD2BQ9ULI0 1458 aa19.76■□□□□ 0.75
LMNA-206ENST00000368300 PEG3Q9GZU2 1588 aa19.7■□□□□ 0.74
LMNA-206ENST00000368300 BAZ1BQ9UIG0 1483 aaKnown RBP19.68■□□□□ 0.74
LMNA-206ENST00000368300 HRCP23327 699 aa19.61■□□□□ 0.73
LMNA-206ENST00000368300 SOGA1O94964 1423 aa19.6■□□□□ 0.73
LMNA-206ENST00000368300 TRIM26Q12899 539 aaPredicted RBP19.58■□□□□ 0.73
LMNA-206ENST00000368300 PPARGC1BQ86YN6 1023 aaKnown RBP19.56■□□□□ 0.72
LMNA-206ENST00000368300 RUSC2Q8N2Y8 1516 aa19.53■□□□□ 0.72
LMNA-206ENST00000368300 WRNQ14191 1432 aaPredicted RBP eCLIP19.52■□□□□ 0.725e-6■■■■□ 20.9
LMNA-206ENST00000368300 CSRNP3Q8WYN3 585 aa19.46■□□□□ 0.71
LMNA-206ENST00000368300 NCAPD3P42695 1498 aa19.42■□□□□ 0.7
LMNA-206ENST00000368300 UBTFP17480 764 aaKnown RBP19.41■□□□□ 0.7
LMNA-206ENST00000368300 SYNJ1O43426 1573 aa19.4■□□□□ 0.7
LMNA-206ENST00000368300 TTBK1Q5TCY1 1321 aaPredicted RBP19.33■□□□□ 0.69
LMNA-206ENST00000368300 HMGXB3Q12766 1538 aa19.31■□□□□ 0.68
LMNA-206ENST00000368300 EEA1Q15075 1411 aa19.3■□□□□ 0.68
LMNA-206ENST00000368300 CEP162Q5TB80 1403 aa19.28■□□□□ 0.68
LMNA-206ENST00000368300 TNIKQ9UKE5 1360 aa19.26■□□□□ 0.67
LMNA-206ENST00000368300 RANGAP1P46060 587 aaPredicted RBP19.23■□□□□ 0.67
LMNA-206ENST00000368300 GOLGA3Q08378 1498 aa19.2■□□□□ 0.66
LMNA-206ENST00000368300 CFTRP13569 1480 aa19.16■□□□□ 0.66
LMNA-206ENST00000368300 TOP2BQ02880 1626 aa19.14■□□□□ 0.66
LMNA-206ENST00000368300 CC2D2AQ9P2K1 1620 aa19.13■□□□□ 0.65
LMNA-206ENST00000368300 CEP164Q9UPV0 1460 aa19.12■□□□□ 0.65
LMNA-206ENST00000368300 CUX1P39880 1505 aa19.11■□□□□ 0.65
LMNA-206ENST00000368300 RAPGEF2Q9Y4G8 1499 aa19.11■□□□□ 0.65
LMNA-206ENST00000368300 CADPSQ9ULU8 1353 aa19.07■□□□□ 0.64
LMNA-206ENST00000368300 BIVM-ERCC5R4GMW8 1640 aa19.04■□□□□ 0.64
LMNA-206ENST00000368300 KIF21BO75037 1637 aa19.02■□□□□ 0.64
LMNA-206ENST00000368300 CLIP1P30622 1438 aa19.02■□□□□ 0.64
LMNA-206ENST00000368300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.99■□□□□ 0.63
LMNA-206ENST00000368300 DNAJC5BQ9UF47 199 aa18.98■□□□□ 0.63
LMNA-206ENST00000368300 PELP1Q8IZL8 1130 aaKnown RBP18.95■□□□□ 0.62
LMNA-206ENST00000368300 KIF27Q86VH2 1401 aa18.94■□□□□ 0.62
LMNA-206ENST00000368300 ZEB1P37275 1124 aaPredicted RBP18.91■□□□□ 0.62
LMNA-206ENST00000368300 NESP48681 1621 aa18.91■□□□□ 0.62
LMNA-206ENST00000368300 PRXQ9BXM0 1461 aa18.91■□□□□ 0.62
LMNA-206ENST00000368300 CUX2O14529 1486 aa18.87■□□□□ 0.61
LMNA-206ENST00000368300 CCER1Q8TC90 406 aaPredicted RBP18.87■□□□□ 0.61
LMNA-206ENST00000368300 FANCD2Q9BXW9 1451 aa18.87■□□□□ 0.61
LMNA-206ENST00000368300 APLP2Q06481 763 aa18.85■□□□□ 0.61
LMNA-206ENST00000368300 VPS8Q8N3P4 1428 aa18.85■□□□□ 0.61
LMNA-206ENST00000368300 FGD5Q6ZNL6 1462 aa18.84■□□□□ 0.61
LMNA-206ENST00000368300 IGF1RP08069 1367 aa18.82■□□□□ 0.6
LMNA-206ENST00000368300 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
LMNA-206ENST00000368300 ERICH3Q5RHP9 1530 aa18.79■□□□□ 0.6
LMNA-206ENST00000368300 HNRNPUL2Q1KMD3 747 aaKnown RBP18.78■□□□□ 0.6
LMNA-206ENST00000368300 RAD54L2Q9Y4B4 1467 aa18.76■□□□□ 0.59
LMNA-206ENST00000368300 CARMIL1Q5VZK9 1371 aa18.73■□□□□ 0.59
LMNA-206ENST00000368300 ARAP1Q96P48 1450 aa18.72■□□□□ 0.59
LMNA-206ENST00000368300 KANK4Q5T7N3 995 aaPredicted RBP18.69■□□□□ 0.58
LMNA-206ENST00000368300 TOPBP1Q92547 1522 aa18.69■□□□□ 0.58
LMNA-206ENST00000368300 POLA1P09884 1462 aaPredicted RBP18.67■□□□□ 0.58
LMNA-206ENST00000368300 P3H3Q8IVL6 736 aa18.65■□□□□ 0.58
LMNA-206ENST00000368300 DNMBPQ6XZF7 1577 aa18.64■□□□□ 0.57
LMNA-206ENST00000368300 ARHGAP35Q9NRY4 1499 aa18.64■□□□□ 0.57
LMNA-206ENST00000368300 URB2Q14146 1524 aaKnown RBP18.61■□□□□ 0.57
LMNA-206ENST00000368300 TDRD9Q8NDG6 1382 aaKnown RBP18.6■□□□□ 0.57
LMNA-206ENST00000368300 LAMC3Q9Y6N6 1575 aa18.59■□□□□ 0.57
LMNA-206ENST00000368300 ABCA10Q8WWZ4 1543 aa18.57■□□□□ 0.56
LMNA-206ENST00000368300 PDS5BQ9NTI5 1447 aa18.57■□□□□ 0.56
LMNA-206ENST00000368300 ATP1B4Q9UN42 357 aaPredicted RBP18.55■□□□□ 0.56
LMNA-206ENST00000368300 ITGAEP38570 1179 aa18.47■□□□□ 0.55
LMNA-206ENST00000368300 KIF21AQ7Z4S6 1674 aa18.45■□□□□ 0.54
LMNA-206ENST00000368300 FHOD3Q2V2M9 1422 aa18.43■□□□□ 0.54
LMNA-206ENST00000368300 GAPVD1Q14C86 1478 aa18.41■□□□□ 0.54
LMNA-206ENST00000368300 AQRO60306 1485 aaKnown RBP eCLIP18.35■□□□□ 0.531e-7■■■■■ 36.5
LMNA-206ENST00000368300 CCNB3Q8WWL7 1395 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms