Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
YBX1P67809 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.43■□□□□ 0.54
YBX1P67809 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.43■□□□□ 0.54
YBX1P67809 FAM207BP-201ENST00000447172 505 ntBASIC18.43■□□□□ 0.54
YBX1P67809 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.43■□□□□ 0.54
YBX1P67809 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.43■□□□□ 0.54
YBX1P67809 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
YBX1P67809 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.43■□□□□ 0.54
YBX1P67809 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.43■□□□□ 0.54
YBX1P67809 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
YBX1P67809 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
YBX1P67809 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
YBX1P67809 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.42■□□□□ 0.54
YBX1P67809 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
YBX1P67809 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
YBX1P67809 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.42■□□□□ 0.54
YBX1P67809 AP000692.2-201ENST00000608391 879 ntBASIC18.42■□□□□ 0.54
YBX1P67809 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
YBX1P67809 AL133373.2-201ENST00000623187 2828 ntBASIC18.42■□□□□ 0.54
YBX1P67809 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
YBX1P67809 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.42■□□□□ 0.54
YBX1P67809 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.42■□□□□ 0.54
YBX1P67809 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.42■□□□□ 0.54
YBX1P67809 AC120498.9-201ENST00000339021 3867 ntBASIC18.42■□□□□ 0.54
YBX1P67809 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
YBX1P67809 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
YBX1P67809 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
YBX1P67809 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
YBX1P67809 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.41■□□□□ 0.54
YBX1P67809 AC097488.1-201ENST00000507834 756 ntBASIC18.41■□□□□ 0.54
YBX1P67809 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 SLC25A1P4-201ENST00000567977 778 ntBASIC18.41■□□□□ 0.54
YBX1P67809 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.41■□□□□ 0.54
YBX1P67809 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.41■□□□□ 0.54
YBX1P67809 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.41■□□□□ 0.54
YBX1P67809 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.41■□□□□ 0.54
YBX1P67809 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
YBX1P67809 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 IRX1P1-201ENST00000438849 1838 ntBASIC18.41■□□□□ 0.54
YBX1P67809 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.41■□□□□ 0.54
YBX1P67809 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
YBX1P67809 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.41■□□□□ 0.54
YBX1P67809 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.4■□□□□ 0.54
YBX1P67809 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
YBX1P67809 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.4■□□□□ 0.54
YBX1P67809 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.4■□□□□ 0.54
YBX1P67809 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
YBX1P67809 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 UNC93B2-201ENST00000285383 730 ntBASIC18.4■□□□□ 0.54
YBX1P67809 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.4■□□□□ 0.54
YBX1P67809 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 MIR1238-201ENST00000408483 83 ntBASIC18.4■□□□□ 0.54
YBX1P67809 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
YBX1P67809 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.4■□□□□ 0.54
YBX1P67809 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
YBX1P67809 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
YBX1P67809 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.4■□□□□ 0.54
YBX1P67809 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
YBX1P67809 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms