Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
RNF40O75150 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF40O75150 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF40O75150 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.36■□□□□ 0.85
RNF40O75150 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF40O75150 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.36■□□□□ 0.85
RNF40O75150 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
RNF40O75150 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
RNF40O75150 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 AC004264.1-201ENST00000608354 794 ntBASIC20.36■□□□□ 0.85
RNF40O75150 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF40O75150 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF40O75150 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF40O75150 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RNF40O75150 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF40O75150 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.35■□□□□ 0.85
RNF40O75150 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.35■□□□□ 0.85
RNF40O75150 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF40O75150 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF40O75150 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
RNF40O75150 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF40O75150 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RNF40O75150 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.34■□□□□ 0.85
RNF40O75150 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.34■□□□□ 0.85
RNF40O75150 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
RNF40O75150 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RNF40O75150 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RNF40O75150 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF40O75150 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.34■□□□□ 0.85
RNF40O75150 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
RNF40O75150 AP002982.1-201ENST00000492365 877 ntBASIC20.34■□□□□ 0.85
RNF40O75150 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.34■□□□□ 0.85
RNF40O75150 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RNF40O75150 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.34■□□□□ 0.85
RNF40O75150 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.34■□□□□ 0.85
RNF40O75150 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF40O75150 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF40O75150 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RNF40O75150 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF40O75150 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.33■□□□□ 0.85
RNF40O75150 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RNF40O75150 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF40O75150 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF40O75150 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.33■□□□□ 0.85
RNF40O75150 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.33■□□□□ 0.85
RNF40O75150 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.33■□□□□ 0.85
RNF40O75150 RBM17P1-201ENST00000453646 1190 ntBASIC20.33■□□□□ 0.85
RNF40O75150 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
RNF40O75150 NUDT16P1-203ENST00000513809 620 ntBASIC20.33■□□□□ 0.85
RNF40O75150 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.33■□□□□ 0.85
RNF40O75150 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.33■□□□□ 0.85
RNF40O75150 MIR6786-201ENST00000616843 113 ntBASIC20.33■□□□□ 0.85
RNF40O75150 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.33■□□□□ 0.85
RNF40O75150 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RNF40O75150 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF40O75150 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RNF40O75150 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RNF40O75150 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms