Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 AL391422.3-201ENST00000603791 2761 ntBASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 SLC25A6P4-201ENST00000586535 553 ntBASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 SDHAP1-207ENST00000440850 2000 ntBASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SLC44A3Q8N4M1 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 AC079776.4-201ENST00000511039 504 ntBASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 AP002469.2-201ENST00000531724 424 ntBASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC44A3Q8N4M1 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 AL162377.1-201ENST00000618844 1793 ntBASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 AL662844.1-201ENST00000546340 181 ntBASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.35■□□□□ 0.69
SLC44A3Q8N4M1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 KRT8P3-201ENST00000519669 1449 ntBASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 Z83836.1-201ENST00000624605 1642 ntBASIC19.34■□□□□ 0.69
SLC44A3Q8N4M1 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 437.1 ms