Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.35■□□□□ 0.69
CBX4O00257 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CBX4O00257 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.35■□□□□ 0.69
CBX4O00257 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 FP475955.4-201ENST00000623131 1990 ntBASIC19.35■□□□□ 0.69
CBX4O00257 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CBX4O00257 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CBX4O00257 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.34■□□□□ 0.69
CBX4O00257 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CBX4O00257 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.34■□□□□ 0.69
CBX4O00257 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CBX4O00257 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CBX4O00257 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.34■□□□□ 0.69
CBX4O00257 TERF1P1-201ENST00000311003 1181 ntBASIC19.34■□□□□ 0.69
CBX4O00257 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CBX4O00257 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.34■□□□□ 0.69
CBX4O00257 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CBX4O00257 AP003041.3-201ENST00000527151 707 ntBASIC19.34■□□□□ 0.69
CBX4O00257 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.34■□□□□ 0.69
CBX4O00257 AC010653.2-201ENST00000623505 997 ntBASIC19.34■□□□□ 0.69
CBX4O00257 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CBX4O00257 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CBX4O00257 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CBX4O00257 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CBX4O00257 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.34■□□□□ 0.69
CBX4O00257 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CBX4O00257 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.33■□□□□ 0.69
CBX4O00257 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CBX4O00257 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CBX4O00257 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CBX4O00257 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CBX4O00257 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CBX4O00257 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CBX4O00257 AL137013.1-201ENST00000432946 1228 ntBASIC19.33■□□□□ 0.68
CBX4O00257 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.33■□□□□ 0.68
CBX4O00257 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.33■□□□□ 0.68
CBX4O00257 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.33■□□□□ 0.68
CBX4O00257 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CBX4O00257 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.33■□□□□ 0.68
CBX4O00257 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CBX4O00257 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CBX4O00257 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.33■□□□□ 0.68
CBX4O00257 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.33■□□□□ 0.68
CBX4O00257 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CBX4O00257 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.33■□□□□ 0.68
CBX4O00257 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.32■□□□□ 0.68
CBX4O00257 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
CBX4O00257 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CBX4O00257 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.32■□□□□ 0.68
CBX4O00257 HMGA1P5-201ENST00000412453 271 ntBASIC19.32■□□□□ 0.68
CBX4O00257 LIN28AP1-201ENST00000429574 405 ntBASIC19.32■□□□□ 0.68
CBX4O00257 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.32■□□□□ 0.68
CBX4O00257 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.32■□□□□ 0.68
CBX4O00257 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.32■□□□□ 0.68
CBX4O00257 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
CBX4O00257 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
CBX4O00257 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
CBX4O00257 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.32■□□□□ 0.68
CBX4O00257 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.32■□□□□ 0.68
CBX4O00257 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.32■□□□□ 0.68
CBX4O00257 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CBX4O00257 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.32■□□□□ 0.68
CBX4O00257 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CBX4O00257 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CBX4O00257 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.31■□□□□ 0.68
CBX4O00257 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CBX4O00257 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CBX4O00257 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.31■□□□□ 0.68
CBX4O00257 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CBX4O00257 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.31■□□□□ 0.68
CBX4O00257 ATP5G1P1-201ENST00000448724 379 ntBASIC19.31■□□□□ 0.68
CBX4O00257 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.31■□□□□ 0.68
CBX4O00257 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.31■□□□□ 0.68
CBX4O00257 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.31■□□□□ 0.68
CBX4O00257 AC010203.1-204ENST00000548782 407 ntBASIC19.31■□□□□ 0.68
CBX4O00257 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms