Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 NEK4P2-201ENST00000580004 1012 ntBASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 AC008622.2-201ENST00000617006 1229 ntBASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 KRT8P45-201ENST00000414328 1447 ntBASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 TSPY23P-201ENST00000440136 739 ntBASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 AC087289.5-201ENST00000586076 3175 ntBASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAIPQ9BWF2 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 AP000523.1-201ENST00000398242 1049 ntBASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAIPQ9BWF2 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAIPQ9BWF2 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms