Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
RFX3P48380 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.83■□□□□ 0.44
RFX3P48380 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
RFX3P48380 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RFX3P48380 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.82■□□□□ 0.44
RFX3P48380 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
RFX3P48380 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.82■□□□□ 0.44
RFX3P48380 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.82■□□□□ 0.44
RFX3P48380 AL160286.2-201ENST00000567150 934 ntBASIC17.82■□□□□ 0.44
RFX3P48380 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.82■□□□□ 0.44
RFX3P48380 TMEM191A-211ENST00000637163 1067 ntBASIC17.82■□□□□ 0.44
RFX3P48380 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RFX3P48380 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.82■□□□□ 0.44
RFX3P48380 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX3P48380 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
RFX3P48380 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX3P48380 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RFX3P48380 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX3P48380 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX3P48380 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX3P48380 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX3P48380 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.81■□□□□ 0.44
RFX3P48380 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.81■□□□□ 0.44
RFX3P48380 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX3P48380 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RFX3P48380 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
RFX3P48380 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.8■□□□□ 0.44
RFX3P48380 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.8■□□□□ 0.44
RFX3P48380 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.8■□□□□ 0.44
RFX3P48380 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 RPS2P4-201ENST00000476944 856 ntBASIC17.8■□□□□ 0.44
RFX3P48380 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.8■□□□□ 0.44
RFX3P48380 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
RFX3P48380 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.8■□□□□ 0.44
RFX3P48380 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.8■□□□□ 0.44
RFX3P48380 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.8■□□□□ 0.44
RFX3P48380 CR392000.1-201ENST00000624770 1228 ntBASIC17.8■□□□□ 0.44
RFX3P48380 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.8■□□□□ 0.44
RFX3P48380 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.8■□□□□ 0.44
RFX3P48380 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX3P48380 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.8■□□□□ 0.44
RFX3P48380 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
RFX3P48380 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.8■□□□□ 0.44
RFX3P48380 AC004408.2-201ENST00000623613 2777 ntBASIC17.79■□□□□ 0.44
RFX3P48380 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
RFX3P48380 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
RFX3P48380 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.79■□□□□ 0.44
RFX3P48380 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms