Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 AC124016.1-201ENST00000609552 612 ntBASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HIF3AQ9Y2N7 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 AL512353.2-201ENST00000448759 1962 ntBASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIF3AQ9Y2N7 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 RN7SL471P-201ENST00000580476 299 ntBASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 AC083906.6-201ENST00000641366 219 ntBASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HIF3AQ9Y2N7 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 Z85996.1-201ENST00000494644 937 ntBASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 AC110285.5-201ENST00000611501 352 ntBASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 AL445675.2-201ENST00000620291 557 ntBASIC17.13■□□□□ 0.33
HIF3AQ9Y2N7 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms