Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 HIST1H2APS4-201ENST00000362070 348 ntBASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 AK4P3-201ENST00000418260 669 ntBASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 PTPA-216ENST00000432651 857 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 MFAP1P1-201ENST00000442257 1255 ntBASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 BX664615.1-201ENST00000443558 458 ntBASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC144BQ3MJ40 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 GUK1-204ENST00000366721 689 ntTSL 3 BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 FAM207BP-201ENST00000447172 505 ntBASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC144BQ3MJ40 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 AC096733.2-201ENST00000609937 1394 ntBASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC22.02■■□□□ 1.12
CCDC144BQ3MJ40 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC22.02■■□□□ 1.11
CCDC144BQ3MJ40 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC22.02■■□□□ 1.11
CCDC144BQ3MJ40 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC22.02■■□□□ 1.11
CCDC144BQ3MJ40 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 HMGA1P5-201ENST00000412453 271 ntBASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 AC116562.4-202ENST00000641738 218 ntBASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC144BQ3MJ40 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms