Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS9D1Q9Y2B5 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS9D1Q9Y2B5 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS9D1Q9Y2B5 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS9D1Q9Y2B5 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.97■□□□□ 0.63
VPS9D1Q9Y2B5 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 KRT8P41-201ENST00000533985 1514 ntBASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 TSPY23P-201ENST00000440136 739 ntBASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 AC026271.3-201ENST00000571884 352 ntBASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 KRT16P1-201ENST00000399124 1418 ntBASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS9D1Q9Y2B5 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 AL589935.2-201ENST00000616471 1231 ntBASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS9D1Q9Y2B5 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 AL049812.1-201ENST00000432563 2267 ntBASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 AC004980.1-204ENST00000429707 299 ntBASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 TSPY20P-201ENST00000450910 630 ntBASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS9D1Q9Y2B5 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 AC006333.2-201ENST00000607957 2099 ntBASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms