Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 PDLIM5-222ENST00000615540 6219 ntTSL 1 (best) BASIC8.6□□□□□ -1.031e-8■■■■□ 20.5
RPS3P23396 PDLIM5-201ENST00000317968 6083 ntAPPRIS P3 TSL 1 (best) BASIC8.46□□□□□ -1.051e-8■■■■□ 20.5
RPS3P23396 PDLIM5-204ENST00000380176 3098 ntTSL 1 (best)7.84□□□□□ -1.151e-8■■■■□ 20.5
RPS3P23396 PDLIM5-221ENST00000542407 2979 ntAPPRIS ALT1 TSL 1 (best) BASIC7.65□□□□□ -1.191e-8■■■■□ 20.5
RPS3P23396 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC7.13□□□□□ -1.271e-8■■■■□ 20.5
RPS3P23396 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.03■□□□□ 0.321e-18■■■■□ 20.5
RPS3P23396 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.41□□□□□ -0.11e-18■■■■□ 20.5
RPS3P23396 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.84■□□□□ 0.295e-7■■■■□ 20.5
RPS3P23396 AL133352.1-202ENST00000527595 1423 ntAPPRIS ALT2 TSL 215.69■□□□□ 0.15e-7■■■■□ 20.5
RPS3P23396 AL133352.1-201ENST00000529568 1952 ntAPPRIS ALT2 TSL 215.14■□□□□ 0.015e-7■■■■□ 20.5
RPS3P23396 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.315e-7■■■■□ 20.5
RPS3P23396 NDUFB8-203ENST00000370322 713 ntTSL 2 BASIC12.27□□□□□ -0.455e-7■■■■□ 20.5
RPS3P23396 AL133352.1-205ENST00000533549 582 ntAPPRIS ALT2 TSL 412.19□□□□□ -0.465e-7■■■■□ 20.5
RPS3P23396 AL133352.1-204ENST00000528174 538 ntAPPRIS ALT2 TSL 39.61□□□□□ -0.875e-7■■■■□ 20.5
RPS3P23396 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.98■□□□□ 0.318e-8■■■■□ 20.4
RPS3P23396 WDR1-206ENST00000502962 1411 ntTSL 516.07■□□□□ 0.168e-8■■■■□ 20.4
RPS3P23396 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.64■□□□□ 0.098e-8■■■■□ 20.4
RPS3P23396 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.128e-8■■■■□ 20.4
RPS3P23396 WDR1-218ENST00000515743 4482 ntTSL 511.98□□□□□ -0.498e-8■■■■□ 20.4
RPS3P23396 WDR1-204ENST00000499869 3054 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.618e-8■■■■□ 20.4
RPS3P23396 HLA-C-207ENST00000484378 862 nt27.31■■□□□ 1.961e-7■■■■□ 20.4
RPS3P23396 TF-202ENST00000414694 546 ntTSL 418.46■□□□□ 0.551e-26■■■■□ 20.4
RPS3P23396 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.46□□□□□ -1.381e-26■■■■□ 20.4
RPS3P23396 BUB3-205ENST00000481952 790 ntTSL 25.95□□□□□ -1.465e-10■■■■□ 20.4
RPS3P23396 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.78■□□□□ 0.764e-10■■■■□ 20.4
RPS3P23396 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.134e-10■■■■□ 20.4
RPS3P23396 SERP1-203ENST00000479209 3934 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.554e-10■■■■□ 20.4
RPS3P23396 FADS1-218ENST00000544696 567 ntTSL 318.1■□□□□ 0.491e-9■■■■□ 20.4
RPS3P23396 FADS1-219ENST00000545245 709 ntTSL 416.52■□□□□ 0.241e-9■■■■□ 20.4
RPS3P23396 FADS1-207ENST00000466716 640 ntTSL 514.98□□□□□ -0.011e-9■■■■□ 20.4
RPS3P23396 FADS1-214ENST00000540767 742 ntTSL 312.55□□□□□ -0.41e-9■■■■□ 20.4
RPS3P23396 FADS1-220ENST00000545405 582 ntTSL 212.07□□□□□ -0.481e-9■■■■□ 20.4
RPS3P23396 FADS1-212ENST00000539419 563 ntTSL 410.26□□□□□ -0.771e-9■■■■□ 20.4
RPS3P23396 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC7.96□□□□□ -1.145e-42■■■■□ 20.4
RPS3P23396 SNRPD3-205ENST00000468770 544 ntTSL 1 (best)6.93□□□□□ -1.34e-8■■■■□ 20.4
RPS3P23396 RPS4Y1-204ENST00000515575 454 ntTSL 30.66□□□□□ -2.32e-12■■■■□ 20.4
RPS3P23396 SLIRP-208ENST00000556956 450 ntTSL 22.72□□□□□ -1.979e-7■■■■□ 20.4
RPS3P23396 CDK1-205ENST00000475504 1720 ntTSL 27.19□□□□□ -1.262e-8■■■■□ 20.4
RPS3P23396 LSM7-205ENST00000589532 539 ntTSL 322.79■■□□□ 1.241e-7■■■■□ 20.4
RPS3P23396 LSM7-206ENST00000591515 710 ntTSL 222.62■■□□□ 1.211e-7■■■■□ 20.4
RPS3P23396 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.162e-6■■■■□ 20.4
RPS3P23396 FGB-205ENST00000498375 970 ntTSL 211.57□□□□□ -0.566e-15■■■■□ 20.4
RPS3P23396 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.52■□□□□ 0.872e-10■■■■□ 20.4
RPS3P23396 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC13.38□□□□□ -0.272e-10■■■■□ 20.4
RPS3P23396 FDFT1-218ENST00000530664 1761 ntTSL 2 BASIC12.11□□□□□ -0.472e-10■■■■□ 20.4
RPS3P23396 FDFT1-225ENST00000622850 1987 ntTSL 2 BASIC10.69□□□□□ -0.72e-10■■■■□ 20.4
RPS3P23396 TGFBI-203ENST00000504185 561 ntTSL 415.59■□□□□ 0.093e-9■■■■□ 20.4
RPS3P23396 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.332e-6■■■■□ 20.4
RPS3P23396 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.512e-6■■■■□ 20.4
RPS3P23396 PIPOX-203ENST00000466889 720 ntTSL 27.67□□□□□ -1.187e-6■■■■□ 20.4
RPS3P23396 PIPOX-202ENST00000419875 518 ntTSL 37.59□□□□□ -1.197e-6■■■■□ 20.4
RPS3P23396 CCT4-202ENST00000461370 388 ntTSL 24.11□□□□□ -1.752e-25■■■■□ 20.4
RPS3P23396 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.611e-12■■■■□ 20.4
RPS3P23396 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.811e-12■■■■□ 20.4
RPS3P23396 SLC16A3-213ENST00000582715 279 ntTSL 514.51□□□□□ -0.091e-12■■■■□ 20.4
RPS3P23396 SHMT2-233ENST00000557529 1369 ntTSL 212.42□□□□□ -0.426e-8■■■■□ 20.4
RPS3P23396 PLIN3-205ENST00000589163 1699 ntTSL 314.62□□□□□ -0.076e-7■■■■□ 20.4
RPS3P23396 C3-203ENST00000594270 349 ntTSL 59.94□□□□□ -0.822e-41■■■■□ 20.4
RPS3P23396 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.032e-15■■■■□ 20.4
RPS3P23396 UBB-207ENST00000578649 477 ntTSL 512.33□□□□□ -0.442e-15■■■■□ 20.4
RPS3P23396 UBB-204ENST00000535788 704 ntTSL 2 BASIC8.88□□□□□ -0.992e-15■■■■□ 20.4
RPS3P23396 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.853e-7■■■■□ 20.4
RPS3P23396 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.383e-7■■■■□ 20.4
RPS3P23396 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.233e-7■■■■□ 20.4
RPS3P23396 NUTF2-208ENST00000587481 2608 nt9.43□□□□□ -0.96e-8■■■■□ 20.4
RPS3P23396 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.39■■□□□ 1.011e-6■■■■□ 20.4
RPS3P23396 TSPAN9-208ENST00000640568 1465 ntTSL 521.26■□□□□ 0.995e-13■■■■□ 20.4
RPS3P23396 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.67■□□□□ 0.261e-6■■■■□ 20.4
RPS3P23396 TSPAN9-204ENST00000444315 570 ntTSL 416.23■□□□□ 0.195e-13■■■■□ 20.4
RPS3P23396 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.011e-6■■■■□ 20.4
RPS3P23396 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.161e-6■■■■□ 20.4
RPS3P23396 TSPAN9-205ENST00000492305 692 ntTSL 511.74□□□□□ -0.535e-13■■■■□ 20.4
RPS3P23396 NPC1-204ENST00000586718 574 ntTSL 38.47□□□□□ -1.055e-13■■■■□ 20.4
RPS3P23396 CTSB-212ENST00000526645 559 ntTSL 410.08□□□□□ -0.82e-9■■■■□ 20.4
RPS3P23396 SEC13-215ENST00000477547 1313 ntTSL 215.09■□□□□ 0.013e-8■■■■□ 20.4
RPS3P23396 HLA-C-210ENST00000640219 976 ntBASIC13.05□□□□□ -0.323e-7■■■■□ 20.3
RPS3P23396 ASAH1-268ENST00000638028 2393 ntTSL 29.13□□□□□ -0.959e-7■■■■□ 20.3
RPS3P23396 ASAH1-214ENST00000635756 1589 ntTSL 57.61□□□□□ -1.199e-7■■■■□ 20.3
RPS3P23396 ASAH1-230ENST00000636563 1891 ntTSL 57.6□□□□□ -1.199e-7■■■■□ 20.3
RPS3P23396 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.09□□□□□ -1.439e-7■■■■□ 20.3
RPS3P23396 ASAH1-206ENST00000518746 3870 ntTSL 25.93□□□□□ -1.469e-7■■■■□ 20.3
RPS3P23396 ASAH1-218ENST00000636009 2148 ntTSL 55.87□□□□□ -1.479e-7■■■■□ 20.3
RPS3P23396 ASAH1-262ENST00000637857 2585 ntTSL 55.17□□□□□ -1.589e-7■■■■□ 20.3
RPS3P23396 ASAH1-246ENST00000637343 3671 ntTSL 45.03□□□□□ -1.69e-7■■■■□ 20.3
RPS3P23396 ASAH1-242ENST00000637014 2626 ntTSL 25.03□□□□□ -1.69e-7■■■■□ 20.3
RPS3P23396 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.13□□□□□ -1.759e-7■■■■□ 20.3
RPS3P23396 ALDH1A1-202ENST00000376939 822 ntTSL 5 BASIC7.12□□□□□ -1.277e-7■■■■□ 20.3
RPS3P23396 POR-216ENST00000454934 2295 ntTSL 315.97■□□□□ 0.154e-14■■■■□ 20.3
RPS3P23396 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.134e-14■■■■□ 20.3
RPS3P23396 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.22■□□□□ 0.034e-14■■■■□ 20.3
RPS3P23396 PPP2R1A-203ENST00000454220 1233 ntTSL 1 (best)15.3■□□□□ 0.043e-7■■■■□ 20.3
RPS3P23396 HNRNPM-208ENST00000597270 1147 ntTSL 219.41■□□□□ 0.72e-11■■■■□ 20.3
RPS3P23396 GOT2-205ENST00000496461 981 ntTSL 213.17□□□□□ -0.31e-6■■■■□ 20.3
RPS3P23396 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.039e-14■■■■□ 20.3
RPS3P23396 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC12.51□□□□□ -0.414e-7■■■■□ 20.3
RPS3P23396 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.127e-7■■■■□ 20.3
RPS3P23396 SNRPD3-204ENST00000439775 640 ntTSL 315.69■□□□□ 0.17e-7■■■■□ 20.3
RPS3P23396 SNRPD3-203ENST00000404603 715 ntTSL 58.28□□□□□ -1.087e-7■■■■□ 20.3
RPS3P23396 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC7.23□□□□□ -1.257e-7■■■■□ 20.3
RPS3P23396 NUCB1-210ENST00000469291 582 ntTSL 213.56□□□□□ -0.244e-8■■■■□ 20.3
Retrieved 100 of 24,271 protein–RNA pairs in 258.9 ms