RNA–Protein interactions for RNA: ENST00000380176.7

PDLIM5-204, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best)

Gene PDLIM5, Length 3,098 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-204ENST00000380176 NISCHQ9Y2I1 1504 aa17.12■□□□□ 0.33
PDLIM5-204ENST00000380176 AEBP2Q6ZN18 517 aaPredicted RBP16.42■□□□□ 0.22
PDLIM5-204ENST00000380176 CHIC1Q5VXU3 224 aa16.06■□□□□ 0.16
PDLIM5-204ENST00000380176 CCDC180Q9P1Z9 1646 aa14.67□□□□□ -0.06
PDLIM5-204ENST00000380176 PHF23Q9BUL5 403 aaPredicted RBP14.54□□□□□ -0.08
PDLIM5-204ENST00000380176 ZCCHC6Q5VYS8 1495 aaKnown RBP14.44□□□□□ -0.1
PDLIM5-204ENST00000380176 SHROOM4Q9ULL8 1493 aa14.43□□□□□ -0.1
PDLIM5-204ENST00000380176 DCAF8L2P0C7V8 631 aa14.21□□□□□ -0.14
PDLIM5-204ENST00000380176 DCAF1Q9Y4B6 1507 aa14.05□□□□□ -0.16
PDLIM5-204ENST00000380176 SUPT5HO00267 1087 aaKnown RBP14.04□□□□□ -0.16
PDLIM5-204ENST00000380176 ABCC9O60706 1549 aa13.73□□□□□ -0.21
PDLIM5-204ENST00000380176 MYO15BQ96JP2 1530 aa13.71□□□□□ -0.21
PDLIM5-204ENST00000380176 SCRIBQ14160 1630 aa13.7□□□□□ -0.22
PDLIM5-204ENST00000380176 EHMT2Q96KQ7 1210 aa13.62□□□□□ -0.23
PDLIM5-204ENST00000380176 NACADO15069 1562 aa13.59□□□□□ -0.23
PDLIM5-204ENST00000380176 RSF1Q96T23 1441 aaPredicted RBP13.46□□□□□ -0.25
PDLIM5-204ENST00000380176 SLC24A1O60721 1099 aa13.42□□□□□ -0.26
PDLIM5-204ENST00000380176 RB1CC1Q8TDY2 1594 aa13.41□□□□□ -0.26
PDLIM5-204ENST00000380176 CECR2Q9BXF3 1484 aa13.38□□□□□ -0.27
PDLIM5-204ENST00000380176 MROH2BQ7Z745 1585 aa13.31□□□□□ -0.28
PDLIM5-204ENST00000380176 SENP3Q9H4L4 574 aaPredicted RBP13.3□□□□□ -0.28
PDLIM5-204ENST00000380176 UNC13AQ9UPW8 1703 aa13.28□□□□□ -0.28
PDLIM5-204ENST00000380176 WIZO95785 1651 aa13.24□□□□□ -0.29
PDLIM5-204ENST00000380176 LOC105371045A0A1W2PR82 267 aa13.16□□□□□ -0.3
PDLIM5-204ENST00000380176 BAZ1AQ9NRL2 1556 aaPredicted RBP13.15□□□□□ -0.3
PDLIM5-204ENST00000380176 PLPPR3Q6T4P5 718 aa13.13□□□□□ -0.31
PDLIM5-204ENST00000380176 SMARCA4P51532 1647 aa13.09□□□□□ -0.31
PDLIM5-204ENST00000380176 TRIM41Q8WV44 630 aa13.09□□□□□ -0.31
PDLIM5-204ENST00000380176 BICRAQ9NZM4 1560 aa13.08□□□□□ -0.31
PDLIM5-204ENST00000380176 PABPN1Q86U42 306 aaKnown RBP eCLIP13.08□□□□□ -0.32
PDLIM5-204ENST00000380176 TOP2AP11388 1531 aaKnown RBP13.01□□□□□ -0.33
PDLIM5-204ENST00000380176 EIF4G1Q04637 1599 aaKnown RBP12.98□□□□□ -0.33
PDLIM5-204ENST00000380176 FAM9AQ8IZU1 332 aaPredicted RBP12.98□□□□□ -0.33
PDLIM5-204ENST00000380176 CCDC88BA6NC98 1476 aa12.95□□□□□ -0.34
PDLIM5-204ENST00000380176 SMARCA2P51531 1590 aa12.94□□□□□ -0.34
PDLIM5-204ENST00000380176 ADRA2BP18089 450 aa12.93□□□□□ -0.34
PDLIM5-204ENST00000380176 PCGF6Q9BYE7 350 aa12.92□□□□□ -0.34
PDLIM5-204ENST00000380176 ABCC8Q09428 1581 aa12.86□□□□□ -0.35
PDLIM5-204ENST00000380176 PEG3Q9GZU2 1588 aa12.85□□□□□ -0.35
PDLIM5-204ENST00000380176 PPP6R1Q9UPN7 881 aa12.82□□□□□ -0.36
PDLIM5-204ENST00000380176 KCNA4P22459 653 aa12.81□□□□□ -0.36
PDLIM5-204ENST00000380176 ATAD2BQ9ULI0 1458 aa12.79□□□□□ -0.36
PDLIM5-204ENST00000380176 HRCP23327 699 aa12.78□□□□□ -0.36
PDLIM5-204ENST00000380176 BAZ1BQ9UIG0 1483 aaKnown RBP12.73□□□□□ -0.37
PDLIM5-204ENST00000380176 TRIM26Q12899 539 aaPredicted RBP12.72□□□□□ -0.37
PDLIM5-204ENST00000380176 RTN4Q9NQC3 1192 aaKnown RBP12.71□□□□□ -0.38
PDLIM5-204ENST00000380176 CSRNP3Q8WYN3 585 aa12.7□□□□□ -0.38
PDLIM5-204ENST00000380176 SOGA1O94964 1423 aa12.68□□□□□ -0.38
PDLIM5-204ENST00000380176 FOXD1Q16676 465 aa12.67□□□□□ -0.38
PDLIM5-204ENST00000380176 RUSC2Q8N2Y8 1516 aa12.65□□□□□ -0.38
PDLIM5-204ENST00000380176 WRNQ14191 1432 aaPredicted RBP eCLIP12.64□□□□□ -0.39
PDLIM5-204ENST00000380176 SYNJ1O43426 1573 aa12.62□□□□□ -0.39
PDLIM5-204ENST00000380176 PPARGC1BQ86YN6 1023 aaKnown RBP12.58□□□□□ -0.4
PDLIM5-204ENST00000380176 NCAPD3P42695 1498 aa12.57□□□□□ -0.4
PDLIM5-204ENST00000380176 HMGXB3Q12766 1538 aa12.56□□□□□ -0.4
PDLIM5-204ENST00000380176 EEA1Q15075 1411 aa12.55□□□□□ -0.4
PDLIM5-204ENST00000380176 CEP162Q5TB80 1403 aa12.52□□□□□ -0.41
PDLIM5-204ENST00000380176 TNIKQ9UKE5 1360 aa12.5□□□□□ -0.41
PDLIM5-204ENST00000380176 UBTFP17480 764 aaKnown RBP12.49□□□□□ -0.41
PDLIM5-204ENST00000380176 TOP2BQ02880 1626 aa12.48□□□□□ -0.41
PDLIM5-204ENST00000380176 GOLGA3Q08378 1498 aa12.47□□□□□ -0.41
PDLIM5-204ENST00000380176 BIVM-ERCC5R4GMW8 1640 aa12.44□□□□□ -0.42
PDLIM5-204ENST00000380176 KIF21BO75037 1637 aa12.43□□□□□ -0.42
PDLIM5-204ENST00000380176 CFTRP13569 1480 aa12.42□□□□□ -0.42
PDLIM5-204ENST00000380176 CEP164Q9UPV0 1460 aa12.42□□□□□ -0.42
PDLIM5-204ENST00000380176 TTBK1Q5TCY1 1321 aaPredicted RBP12.4□□□□□ -0.42
PDLIM5-204ENST00000380176 CUX1P39880 1505 aa12.4□□□□□ -0.42
PDLIM5-204ENST00000380176 CC2D2AQ9P2K1 1620 aa12.39□□□□□ -0.43
PDLIM5-204ENST00000380176 RAPGEF2Q9Y4G8 1499 aa12.39□□□□□ -0.43
PDLIM5-204ENST00000380176 PRDM2Q13029 1718 aa12.36□□□□□ -0.43
PDLIM5-204ENST00000380176 CLIP1P30622 1438 aa12.32□□□□□ -0.44
PDLIM5-204ENST00000380176 ZEB1P37275 1124 aaPredicted RBP12.31□□□□□ -0.44
PDLIM5-204ENST00000380176 CADPSQ9ULU8 1353 aa12.3□□□□□ -0.44
PDLIM5-204ENST00000380176 RANGAP1P46060 587 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-204ENST00000380176 PRXQ9BXM0 1461 aa12.28□□□□□ -0.44
PDLIM5-204ENST00000380176 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.27□□□□□ -0.44
PDLIM5-204ENST00000380176 ERICH3Q5RHP9 1530 aa12.26□□□□□ -0.45
PDLIM5-204ENST00000380176 KIF27Q86VH2 1401 aa12.25□□□□□ -0.45
PDLIM5-204ENST00000380176 VPS8Q8N3P4 1428 aa12.24□□□□□ -0.45
PDLIM5-204ENST00000380176 MYT1Q01538 1121 aa12.23□□□□□ -0.45
PDLIM5-204ENST00000380176 PELP1Q8IZL8 1130 aaKnown RBP12.22□□□□□ -0.45
PDLIM5-204ENST00000380176 FGD5Q6ZNL6 1462 aa12.2□□□□□ -0.46
PDLIM5-204ENST00000380176 CCER1Q8TC90 406 aaPredicted RBP12.2□□□□□ -0.46
PDLIM5-204ENST00000380176 FANCD2Q9BXW9 1451 aa12.2□□□□□ -0.46
PDLIM5-204ENST00000380176 NESP48681 1621 aa12.2□□□□□ -0.46
PDLIM5-204ENST00000380176 CUX2O14529 1486 aa12.19□□□□□ -0.46
PDLIM5-204ENST00000380176 SLC4A1APQ9BWU0 796 aaKnown RBP12.19□□□□□ -0.46
PDLIM5-204ENST00000380176 AMER1Q5JTC6 1135 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-204ENST00000380176 ARAP1Q96P48 1450 aa12.17□□□□□ -0.46
PDLIM5-204ENST00000380176 IGF1RP08069 1367 aa12.16□□□□□ -0.46
PDLIM5-204ENST00000380176 DNAJC5BQ9UF47 199 aa12.14□□□□□ -0.47
PDLIM5-204ENST00000380176 APLP2Q06481 763 aa12.14□□□□□ -0.47
PDLIM5-204ENST00000380176 DNMBPQ6XZF7 1577 aa12.11□□□□□ -0.47
PDLIM5-204ENST00000380176 RAD54L2Q9Y4B4 1467 aa12.11□□□□□ -0.47
PDLIM5-204ENST00000380176 TOPBP1Q92547 1522 aa12.1□□□□□ -0.47
PDLIM5-204ENST00000380176 ARHGAP35Q9NRY4 1499 aa12.1□□□□□ -0.47
PDLIM5-204ENST00000380176 HNRNPUL2Q1KMD3 747 aaKnown RBP12.1□□□□□ -0.47
PDLIM5-204ENST00000380176 CARMIL1Q5VZK9 1371 aa12.1□□□□□ -0.47
PDLIM5-204ENST00000380176 POLA1P09884 1462 aaPredicted RBP12.09□□□□□ -0.47
PDLIM5-204ENST00000380176 KANK4Q5T7N3 995 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms