RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 NISCHQ9Y2I1 1504 aa17.29■□□□□ 0.36
PDLIM5-221ENST00000542407 CCDC180Q9P1Z9 1646 aa15.01□□□□□ -0.01
PDLIM5-221ENST00000542407 CHIC1Q5VXU3 224 aa14.98□□□□□ -0.01
PDLIM5-221ENST00000542407 ZCCHC6Q5VYS8 1495 aaKnown RBP14.58□□□□□ -0.08
PDLIM5-221ENST00000542407 AEBP2Q6ZN18 517 aaPredicted RBP14.57□□□□□ -0.08
PDLIM5-221ENST00000542407 DCAF1Q9Y4B6 1507 aa14.31□□□□□ -0.12
PDLIM5-221ENST00000542407 SHROOM4Q9ULL8 1493 aa14.16□□□□□ -0.14
PDLIM5-221ENST00000542407 DCAF8L2P0C7V8 631 aa14.07□□□□□ -0.16
PDLIM5-221ENST00000542407 MYO15BQ96JP2 1530 aa14.07□□□□□ -0.16
PDLIM5-221ENST00000542407 ABCC9O60706 1549 aa14.01□□□□□ -0.17
PDLIM5-221ENST00000542407 PELP1Q8IZL8 1130 aaKnown RBP13.99□□□□□ -0.17
PDLIM5-221ENST00000542407 NACADO15069 1562 aa13.91□□□□□ -0.18
PDLIM5-221ENST00000542407 MYT1Q01538 1121 aa13.89□□□□□ -0.19
PDLIM5-221ENST00000542407 SCRIBQ14160 1630 aa13.82□□□□□ -0.2
PDLIM5-221ENST00000542407 RB1CC1Q8TDY2 1594 aa13.74□□□□□ -0.21
PDLIM5-221ENST00000542407 PHF23Q9BUL5 403 aaPredicted RBP13.68□□□□□ -0.22
PDLIM5-221ENST00000542407 SUPT5HO00267 1087 aaKnown RBP13.66□□□□□ -0.22
PDLIM5-221ENST00000542407 EHMT2Q96KQ7 1210 aa13.64□□□□□ -0.23
PDLIM5-221ENST00000542407 UNC13AQ9UPW8 1703 aa13.55□□□□□ -0.24
PDLIM5-221ENST00000542407 SLC24A1O60721 1099 aa13.5□□□□□ -0.25
PDLIM5-221ENST00000542407 TTBK1Q5TCY1 1321 aaPredicted RBP13.49□□□□□ -0.25
PDLIM5-221ENST00000542407 RSF1Q96T23 1441 aaPredicted RBP13.47□□□□□ -0.25
PDLIM5-221ENST00000542407 CECR2Q9BXF3 1484 aa13.44□□□□□ -0.26
PDLIM5-221ENST00000542407 BICRAQ9NZM4 1560 aa13.41□□□□□ -0.26
PDLIM5-221ENST00000542407 MROH2BQ7Z745 1585 aa13.38□□□□□ -0.27
PDLIM5-221ENST00000542407 PRKCSHP14314 528 aaPredicted RBP13.32□□□□□ -0.28
PDLIM5-221ENST00000542407 BAZ1AQ9NRL2 1556 aaPredicted RBP13.31□□□□□ -0.28
PDLIM5-221ENST00000542407 WIZO95785 1651 aa13.28□□□□□ -0.28
PDLIM5-221ENST00000542407 SMARCA4P51532 1647 aa13.27□□□□□ -0.29
PDLIM5-221ENST00000542407 PABPN1Q86U42 306 aaKnown RBP eCLIP13.22□□□□□ -0.29
PDLIM5-221ENST00000542407 TOP2AP11388 1531 aaKnown RBP13.13□□□□□ -0.31
PDLIM5-221ENST00000542407 PLPPR3Q6T4P5 718 aa13.12□□□□□ -0.31
PDLIM5-221ENST00000542407 PEG3Q9GZU2 1588 aa13.12□□□□□ -0.31
PDLIM5-221ENST00000542407 HRCP23327 699 aa13.06□□□□□ -0.32
PDLIM5-221ENST00000542407 EIF4G1Q04637 1599 aaKnown RBP13.06□□□□□ -0.32
PDLIM5-221ENST00000542407 APLP2Q06481 763 aa13.05□□□□□ -0.32
PDLIM5-221ENST00000542407 SMARCA2P51531 1590 aa13.03□□□□□ -0.32
PDLIM5-221ENST00000542407 ERICH6Q7L0X2 663 aa13.03□□□□□ -0.32
PDLIM5-221ENST00000542407 CCDC88BA6NC98 1476 aa13□□□□□ -0.33
PDLIM5-221ENST00000542407 ATAD2BQ9ULI0 1458 aa12.99□□□□□ -0.33
PDLIM5-221ENST00000542407 PPARGC1BQ86YN6 1023 aaKnown RBP12.91□□□□□ -0.34
PDLIM5-221ENST00000542407 BAZ1BQ9UIG0 1483 aaKnown RBP12.9□□□□□ -0.35
PDLIM5-221ENST00000542407 HMGXB3Q12766 1538 aa12.86□□□□□ -0.35
PDLIM5-221ENST00000542407 NCAPD3P42695 1498 aa12.85□□□□□ -0.35
PDLIM5-221ENST00000542407 KCNA4P22459 653 aa12.84□□□□□ -0.35
PDLIM5-221ENST00000542407 TRIM41Q8WV44 630 aa12.82□□□□□ -0.36
PDLIM5-221ENST00000542407 PCGF6Q9BYE7 350 aa12.82□□□□□ -0.36
PDLIM5-221ENST00000542407 ABCC8Q09428 1581 aa12.78□□□□□ -0.36
PDLIM5-221ENST00000542407 RTN4Q9NQC3 1192 aaKnown RBP12.78□□□□□ -0.36
PDLIM5-221ENST00000542407 CSRNP3Q8WYN3 585 aa12.75□□□□□ -0.37
PDLIM5-221ENST00000542407 DAXXQ9UER7 740 aaPredicted RBP12.73□□□□□ -0.37
PDLIM5-221ENST00000542407 CC2D2AQ9P2K1 1620 aa12.71□□□□□ -0.37
PDLIM5-221ENST00000542407 LOC105371045A0A1W2PR82 267 aa12.7□□□□□ -0.38
PDLIM5-221ENST00000542407 BCL11AQ9H165 835 aa12.69□□□□□ -0.38
PDLIM5-221ENST00000542407 WRNQ14191 1432 aaPredicted RBP eCLIP12.64□□□□□ -0.39
PDLIM5-221ENST00000542407 SYNJ1O43426 1573 aa12.64□□□□□ -0.39
PDLIM5-221ENST00000542407 CFTRP13569 1480 aa12.61□□□□□ -0.39
PDLIM5-221ENST00000542407 FAM9AQ8IZU1 332 aaPredicted RBP12.59□□□□□ -0.39
PDLIM5-221ENST00000542407 PRDM2Q13029 1718 aa12.58□□□□□ -0.4
PDLIM5-221ENST00000542407 SOGA1O94964 1423 aa12.57□□□□□ -0.4
PDLIM5-221ENST00000542407 TOP2BQ02880 1626 aa12.56□□□□□ -0.4
PDLIM5-221ENST00000542407 BIVM-ERCC5R4GMW8 1640 aa12.56□□□□□ -0.4
PDLIM5-221ENST00000542407 RUSC2Q8N2Y8 1516 aa12.53□□□□□ -0.4
PDLIM5-221ENST00000542407 SCAF1Q9H7N4 1312 aaKnown RBP12.52□□□□□ -0.4
PDLIM5-221ENST00000542407 EEA1Q15075 1411 aa12.52□□□□□ -0.4
PDLIM5-221ENST00000542407 CADPSQ9ULU8 1353 aa12.5□□□□□ -0.41
PDLIM5-221ENST00000542407 CUX1P39880 1505 aa12.5□□□□□ -0.41
PDLIM5-221ENST00000542407 KIF21BO75037 1637 aa12.41□□□□□ -0.42
PDLIM5-221ENST00000542407 NESP48681 1621 aa12.38□□□□□ -0.43
PDLIM5-221ENST00000542407 FANCD2Q9BXW9 1451 aa12.38□□□□□ -0.43
PDLIM5-221ENST00000542407 LAMC3Q9Y6N6 1575 aa12.38□□□□□ -0.43
PDLIM5-221ENST00000542407 GOLGA3Q08378 1498 aa12.37□□□□□ -0.43
PDLIM5-221ENST00000542407 ADRA2BP18089 450 aa12.37□□□□□ -0.43
PDLIM5-221ENST00000542407 DNAJC5BQ9UF47 199 aa12.37□□□□□ -0.43
PDLIM5-221ENST00000542407 TNIKQ9UKE5 1360 aa12.37□□□□□ -0.43
PDLIM5-221ENST00000542407 CEP164Q9UPV0 1460 aa12.36□□□□□ -0.43
PDLIM5-221ENST00000542407 CEP162Q5TB80 1403 aa12.32□□□□□ -0.44
PDLIM5-221ENST00000542407 EIF5BO60841 1220 aaKnown RBP12.31□□□□□ -0.44
PDLIM5-221ENST00000542407 DNMBPQ6XZF7 1577 aa12.31□□□□□ -0.44
PDLIM5-221ENST00000542407 FGD5Q6ZNL6 1462 aa12.31□□□□□ -0.44
PDLIM5-221ENST00000542407 PRXQ9BXM0 1461 aa12.3□□□□□ -0.44
PDLIM5-221ENST00000542407 RAPGEF2Q9Y4G8 1499 aa12.3□□□□□ -0.44
PDLIM5-221ENST00000542407 ERICH3Q5RHP9 1530 aa12.29□□□□□ -0.44
PDLIM5-221ENST00000542407 KIF27Q86VH2 1401 aa12.28□□□□□ -0.44
PDLIM5-221ENST00000542407 TOPBP1Q92547 1522 aa12.28□□□□□ -0.44
PDLIM5-221ENST00000542407 URB2Q14146 1524 aaKnown RBP12.25□□□□□ -0.45
PDLIM5-221ENST00000542407 KIF21AQ7Z4S6 1674 aa12.25□□□□□ -0.45
PDLIM5-221ENST00000542407 POLA1P09884 1462 aaPredicted RBP12.24□□□□□ -0.45
PDLIM5-221ENST00000542407 CUX2O14529 1486 aa12.23□□□□□ -0.45
PDLIM5-221ENST00000542407 PDS5BQ9NTI5 1447 aa12.23□□□□□ -0.45
PDLIM5-221ENST00000542407 UBTFP17480 764 aaKnown RBP12.23□□□□□ -0.45
PDLIM5-221ENST00000542407 TRIM26Q12899 539 aaPredicted RBP12.23□□□□□ -0.45
PDLIM5-221ENST00000542407 ABCA10Q8WWZ4 1543 aa12.21□□□□□ -0.45
PDLIM5-221ENST00000542407 WDR97A6NE52 1622 aa12.21□□□□□ -0.45
PDLIM5-221ENST00000542407 IGF1RP08069 1367 aa12.2□□□□□ -0.46
PDLIM5-221ENST00000542407 RAD54L2Q9Y4B4 1467 aa12.19□□□□□ -0.46
PDLIM5-221ENST00000542407 ZEB1P37275 1124 aaPredicted RBP12.18□□□□□ -0.46
PDLIM5-221ENST00000542407 AMER1Q5JTC6 1135 aaPredicted RBP12.17□□□□□ -0.46
PDLIM5-221ENST00000542407 SLC4A1APQ9BWU0 796 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-221ENST00000542407 CLIP1P30622 1438 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 495 ms