RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 NISCHQ9Y2I1 1504 aa16.69■□□□□ 0.26
PDLIM5-222ENST00000615540 DCAF8L2P0C7V8 631 aa15.99■□□□□ 0.15
PDLIM5-222ENST00000615540 SHROOM4Q9ULL8 1493 aa15.56■□□□□ 0.08
PDLIM5-222ENST00000615540 SUPT5HO00267 1087 aaKnown RBP15.41■□□□□ 0.06
PDLIM5-222ENST00000615540 EHMT2Q96KQ7 1210 aa15.02■□□□□ -0
PDLIM5-222ENST00000615540 FAM9AQ8IZU1 332 aaPredicted RBP14.48□□□□□ -0.09
PDLIM5-222ENST00000615540 TTBK1Q5TCY1 1321 aaPredicted RBP14.33□□□□□ -0.11
PDLIM5-222ENST00000615540 PCGF6Q9BYE7 350 aa14.29□□□□□ -0.12
PDLIM5-222ENST00000615540 TRIM41Q8WV44 630 aa14.2□□□□□ -0.14
PDLIM5-222ENST00000615540 RANGAP1P46060 587 aaPredicted RBP14.13□□□□□ -0.15
PDLIM5-222ENST00000615540 ABCC9O60706 1549 aa14.1□□□□□ -0.15
PDLIM5-222ENST00000615540 CHIC1Q5VXU3 224 aa14.03□□□□□ -0.16
PDLIM5-222ENST00000615540 LOC105371045A0A1W2PR82 267 aa14.03□□□□□ -0.16
PDLIM5-222ENST00000615540 PPARGC1BQ86YN6 1023 aaKnown RBP14.02□□□□□ -0.16
PDLIM5-222ENST00000615540 ZCCHC6Q5VYS8 1495 aaKnown RBP13.94□□□□□ -0.18
PDLIM5-222ENST00000615540 APLP2Q06481 763 aa13.92□□□□□ -0.18
PDLIM5-222ENST00000615540 CCDC180Q9P1Z9 1646 aa13.9□□□□□ -0.18
PDLIM5-222ENST00000615540 UBTFP17480 764 aaKnown RBP13.86□□□□□ -0.19
PDLIM5-222ENST00000615540 SCRIBQ14160 1630 aa13.86□□□□□ -0.19
PDLIM5-222ENST00000615540 PABPN1Q86U42 306 aaKnown RBP eCLIP13.84□□□□□ -0.19
PDLIM5-222ENST00000615540 CCER1Q8TC90 406 aaPredicted RBP13.76□□□□□ -0.21
PDLIM5-222ENST00000615540 ATP1B4Q9UN42 357 aaPredicted RBP13.73□□□□□ -0.21
PDLIM5-222ENST00000615540 TRIM26Q12899 539 aaPredicted RBP13.7□□□□□ -0.22
PDLIM5-222ENST00000615540 HRCP23327 699 aa13.64□□□□□ -0.23
PDLIM5-222ENST00000615540 ZEB1P37275 1124 aaPredicted RBP13.6□□□□□ -0.23
PDLIM5-222ENST00000615540 MYO15BQ96JP2 1530 aa13.53□□□□□ -0.24
PDLIM5-222ENST00000615540 YTHDC1Q96MU7 727 aaKnown RBP13.46□□□□□ -0.25
PDLIM5-222ENST00000615540 ITGAEP38570 1179 aa13.45□□□□□ -0.26
PDLIM5-222ENST00000615540 HNRNPUL2Q1KMD3 747 aaKnown RBP13.45□□□□□ -0.26
PDLIM5-222ENST00000615540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.44□□□□□ -0.26
PDLIM5-222ENST00000615540 RSF1Q96T23 1441 aaPredicted RBP13.3□□□□□ -0.28
PDLIM5-222ENST00000615540 RB1CC1Q8TDY2 1594 aa13.29□□□□□ -0.28
PDLIM5-222ENST00000615540 CENPBP07199 599 aaPredicted RBP13.28□□□□□ -0.28
PDLIM5-222ENST00000615540 NACADO15069 1562 aa13.22□□□□□ -0.29
PDLIM5-222ENST00000615540 DCAF1Q9Y4B6 1507 aa13.19□□□□□ -0.3
PDLIM5-222ENST00000615540 CECR2Q9BXF3 1484 aa13.18□□□□□ -0.3
PDLIM5-222ENST00000615540 CSRNP3Q8WYN3 585 aa13.16□□□□□ -0.3
PDLIM5-222ENST00000615540 PELP1Q8IZL8 1130 aaKnown RBP13.15□□□□□ -0.3
PDLIM5-222ENST00000615540 FAM50AQ14320 339 aaKnown RBP13.14□□□□□ -0.31
PDLIM5-222ENST00000615540 P3H3Q8IVL6 736 aa13.12□□□□□ -0.31
PDLIM5-222ENST00000615540 CNGB1Q14028 1251 aaPredicted RBP13.09□□□□□ -0.31
PDLIM5-222ENST00000615540 DIEXFQ68CQ4 756 aaKnown RBP13.08□□□□□ -0.32
PDLIM5-222ENST00000615540 ARID3CA6NKF2 412 aa13.06□□□□□ -0.32
PDLIM5-222ENST00000615540 MROH2BQ7Z745 1585 aa13.05□□□□□ -0.32
PDLIM5-222ENST00000615540 NEUROD1Q13562 356 aa13.03□□□□□ -0.32
PDLIM5-222ENST00000615540 WIZO95785 1651 aa13.02□□□□□ -0.33
PDLIM5-222ENST00000615540 POLR3GLQ9BT43 218 aa13.01□□□□□ -0.33
PDLIM5-222ENST00000615540 BAZ1AQ9NRL2 1556 aaPredicted RBP12.97□□□□□ -0.33
PDLIM5-222ENST00000615540 ABCC8Q09428 1581 aa12.96□□□□□ -0.34
PDLIM5-222ENST00000615540 BAZ1BQ9UIG0 1483 aaKnown RBP12.95□□□□□ -0.34
PDLIM5-222ENST00000615540 FBLN2P98095 1184 aa12.95□□□□□ -0.34
PDLIM5-222ENST00000615540 MYT1LQ9UL68 1186 aa12.92□□□□□ -0.34
PDLIM5-222ENST00000615540 TRIM52Q96A61 297 aa12.92□□□□□ -0.34
PDLIM5-222ENST00000615540 CEP162Q5TB80 1403 aa12.9□□□□□ -0.34
PDLIM5-222ENST00000615540 CCDC88BA6NC98 1476 aa12.89□□□□□ -0.35
PDLIM5-222ENST00000615540 WRNQ14191 1432 aaPredicted RBP eCLIP12.88□□□□□ -0.35
PDLIM5-222ENST00000615540 NEFLP07196 543 aa12.87□□□□□ -0.35
PDLIM5-222ENST00000615540 SOGA1O94964 1423 aa12.86□□□□□ -0.35
PDLIM5-222ENST00000615540 ZNF316A6NFI3 1004 aaPredicted RBP12.85□□□□□ -0.35
PDLIM5-222ENST00000615540 GOLGA3Q08378 1498 aa12.84□□□□□ -0.35
PDLIM5-222ENST00000615540 CLIP1P30622 1438 aa12.84□□□□□ -0.35
PDLIM5-222ENST00000615540 GTF3C3Q9Y5Q9 886 aa12.79□□□□□ -0.36
PDLIM5-222ENST00000615540 TOP2AP11388 1531 aaKnown RBP12.78□□□□□ -0.36
PDLIM5-222ENST00000615540 ZNF326Q5BKZ1 582 aaKnown RBP12.77□□□□□ -0.37
PDLIM5-222ENST00000615540 ERICH6Q7L0X2 663 aa12.76□□□□□ -0.37
PDLIM5-222ENST00000615540 SMARCA4P51532 1647 aa12.74□□□□□ -0.37
PDLIM5-222ENST00000615540 ZNF777Q9ULD5 760 aaPredicted RBP12.74□□□□□ -0.37
PDLIM5-222ENST00000615540 TNIKQ9UKE5 1360 aa12.72□□□□□ -0.37
PDLIM5-222ENST00000615540 BCANQ96GW7 911 aa12.72□□□□□ -0.37
PDLIM5-222ENST00000615540 CEP164Q9UPV0 1460 aa12.7□□□□□ -0.38
PDLIM5-222ENST00000615540 EEA1Q15075 1411 aa12.7□□□□□ -0.38
PDLIM5-222ENST00000615540 CHIC2Q9UKJ5 165 aa12.68□□□□□ -0.38
PDLIM5-222ENST00000615540 SENP3Q9H4L4 574 aaPredicted RBP12.66□□□□□ -0.38
PDLIM5-222ENST00000615540 ACIN1Q9UKV3 1341 aaKnown RBP12.66□□□□□ -0.38
PDLIM5-222ENST00000615540 KIF27Q86VH2 1401 aa12.64□□□□□ -0.39
PDLIM5-222ENST00000615540 SMARCA2P51531 1590 aa12.63□□□□□ -0.39
PDLIM5-222ENST00000615540 RUSC2Q8N2Y8 1516 aa12.63□□□□□ -0.39
PDLIM5-222ENST00000615540 ANP32CO43423 234 aa12.61□□□□□ -0.39
PDLIM5-222ENST00000615540 SLC4A1APQ9BWU0 796 aaKnown RBP12.61□□□□□ -0.39
PDLIM5-222ENST00000615540 HIRIP3Q9BW71 556 aaPredicted RBP12.61□□□□□ -0.39
PDLIM5-222ENST00000615540 CUX2O14529 1486 aa12.58□□□□□ -0.4
PDLIM5-222ENST00000615540 MIER1Q8N108 512 aa12.56□□□□□ -0.4
PDLIM5-222ENST00000615540 MTUS2Q5JR59 1369 aa12.56□□□□□ -0.4
PDLIM5-222ENST00000615540 ATAD2BQ9ULI0 1458 aa12.56□□□□□ -0.4
PDLIM5-222ENST00000615540 DDX10Q13206 875 aaKnown RBP12.55□□□□□ -0.4
PDLIM5-222ENST00000615540 TONSLQ96HA7 1378 aa12.54□□□□□ -0.4
PDLIM5-222ENST00000615540 EIF4G1Q04637 1599 aaKnown RBP12.54□□□□□ -0.4
PDLIM5-222ENST00000615540 RRP7BPQ9NSQ0 103 aa12.53□□□□□ -0.4
PDLIM5-222ENST00000615540 SCAF1Q9H7N4 1312 aaKnown RBP12.53□□□□□ -0.4
PDLIM5-222ENST00000615540 KANK4Q5T7N3 995 aaPredicted RBP12.51□□□□□ -0.41
PDLIM5-222ENST00000615540 PLPPR3Q6T4P5 718 aa12.51□□□□□ -0.41
PDLIM5-222ENST00000615540 CHMP7Q8WUX9 453 aaPredicted RBP12.51□□□□□ -0.41
PDLIM5-222ENST00000615540 RAPGEF2Q9Y4G8 1499 aa12.5□□□□□ -0.41
PDLIM5-222ENST00000615540 SENP3-EIF4A1A0A087X0R7 540 aa12.5□□□□□ -0.41
PDLIM5-222ENST00000615540 CDK11AQ9UQ88 783 aaPredicted RBP12.48□□□□□ -0.41
PDLIM5-222ENST00000615540 CARMIL1Q5VZK9 1371 aa12.48□□□□□ -0.41
PDLIM5-222ENST00000615540 VPS8Q8N3P4 1428 aa12.46□□□□□ -0.42
PDLIM5-222ENST00000615540 SIN3AQ96ST3 1273 aa12.44□□□□□ -0.42
PDLIM5-222ENST00000615540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.44□□□□□ -0.422e-6■□□□□ 11
PDLIM5-222ENST00000615540 ERCC6Q03468 1493 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms