RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 NISCHQ9Y2I1 1504 aa17.83■□□□□ 0.45
PDLIM5-201ENST00000317968 CCDC180Q9P1Z9 1646 aa15.45■□□□□ 0.06
PDLIM5-201ENST00000317968 DCAF8L2P0C7V8 631 aa15.4■□□□□ 0.06
PDLIM5-201ENST00000317968 ZCCHC6Q5VYS8 1495 aaKnown RBP14.92□□□□□ -0.02
PDLIM5-201ENST00000317968 SHROOM4Q9ULL8 1493 aa14.79□□□□□ -0.04
PDLIM5-201ENST00000317968 DCAF1Q9Y4B6 1507 aa14.79□□□□□ -0.04
PDLIM5-201ENST00000317968 ABCC9O60706 1549 aa14.75□□□□□ -0.05
PDLIM5-201ENST00000317968 MYO15BQ96JP2 1530 aa14.63□□□□□ -0.07
PDLIM5-201ENST00000317968 NACADO15069 1562 aa14.6□□□□□ -0.07
PDLIM5-201ENST00000317968 SUPT5HO00267 1087 aaKnown RBP14.55□□□□□ -0.08
PDLIM5-201ENST00000317968 RB1CC1Q8TDY2 1594 aa14.5□□□□□ -0.09
PDLIM5-201ENST00000317968 SCRIBQ14160 1630 aa14.22□□□□□ -0.13
PDLIM5-201ENST00000317968 FAM9AQ8IZU1 332 aaPredicted RBP14.07□□□□□ -0.16
PDLIM5-201ENST00000317968 PABPN1Q86U42 306 aaKnown RBP eCLIP14.01□□□□□ -0.17
PDLIM5-201ENST00000317968 BAZ1AQ9NRL2 1556 aaPredicted RBP13.93□□□□□ -0.18
PDLIM5-201ENST00000317968 RSF1Q96T23 1441 aaPredicted RBP13.87□□□□□ -0.19
PDLIM5-201ENST00000317968 TRIM41Q8WV44 630 aa13.82□□□□□ -0.2
PDLIM5-201ENST00000317968 CHIC1Q5VXU3 224 aa13.73□□□□□ -0.21
PDLIM5-201ENST00000317968 CECR2Q9BXF3 1484 aa13.7□□□□□ -0.22
PDLIM5-201ENST00000317968 SMARCA2P51531 1590 aa13.68□□□□□ -0.22
PDLIM5-201ENST00000317968 MROH2BQ7Z745 1585 aa13.64□□□□□ -0.23
PDLIM5-201ENST00000317968 BAZ1BQ9UIG0 1483 aaKnown RBP13.63□□□□□ -0.23
PDLIM5-201ENST00000317968 SMARCA4P51532 1647 aa13.61□□□□□ -0.23
PDLIM5-201ENST00000317968 TOP2AP11388 1531 aaKnown RBP13.56□□□□□ -0.24
PDLIM5-201ENST00000317968 BICRAQ9NZM4 1560 aa13.51□□□□□ -0.25
PDLIM5-201ENST00000317968 ATAD2BQ9ULI0 1458 aa13.5□□□□□ -0.25
PDLIM5-201ENST00000317968 APLP2Q06481 763 aa13.48□□□□□ -0.25
PDLIM5-201ENST00000317968 NCAPD3P42695 1498 aa13.44□□□□□ -0.26
PDLIM5-201ENST00000317968 WIZO95785 1651 aa13.42□□□□□ -0.26
PDLIM5-201ENST00000317968 UNC13AQ9UPW8 1703 aa13.4□□□□□ -0.26
PDLIM5-201ENST00000317968 EIF4G1Q04637 1599 aaKnown RBP13.39□□□□□ -0.27
PDLIM5-201ENST00000317968 EEA1Q15075 1411 aa13.39□□□□□ -0.27
PDLIM5-201ENST00000317968 CCDC88BA6NC98 1476 aa13.38□□□□□ -0.27
PDLIM5-201ENST00000317968 PEG3Q9GZU2 1588 aa13.37□□□□□ -0.27
PDLIM5-201ENST00000317968 HMGXB3Q12766 1538 aa13.36□□□□□ -0.27
PDLIM5-201ENST00000317968 UBTFP17480 764 aaKnown RBP13.34□□□□□ -0.27
PDLIM5-201ENST00000317968 WRNQ14191 1432 aaPredicted RBP eCLIP13.31□□□□□ -0.28
PDLIM5-201ENST00000317968 CSRNP3Q8WYN3 585 aa13.27□□□□□ -0.29
PDLIM5-201ENST00000317968 CADPSQ9ULU8 1353 aa13.24□□□□□ -0.29
PDLIM5-201ENST00000317968 PDS5BQ9NTI5 1447 aa13.2□□□□□ -0.3
PDLIM5-201ENST00000317968 EHMT2Q96KQ7 1210 aa13.18□□□□□ -0.3
PDLIM5-201ENST00000317968 ABCC8Q09428 1581 aa13.15□□□□□ -0.3
PDLIM5-201ENST00000317968 CC2D2AQ9P2K1 1620 aa13.13□□□□□ -0.31
PDLIM5-201ENST00000317968 KIF27Q86VH2 1401 aa13.12□□□□□ -0.31
PDLIM5-201ENST00000317968 LOC105371045A0A1W2PR82 267 aa13.12□□□□□ -0.31
PDLIM5-201ENST00000317968 CFTRP13569 1480 aa13.11□□□□□ -0.31
PDLIM5-201ENST00000317968 ATP1B4Q9UN42 357 aaPredicted RBP13.08□□□□□ -0.32
PDLIM5-201ENST00000317968 CEP164Q9UPV0 1460 aa13.06□□□□□ -0.32
PDLIM5-201ENST00000317968 GOLGA3Q08378 1498 aa13.06□□□□□ -0.32
PDLIM5-201ENST00000317968 FANCD2Q9BXW9 1451 aa13.01□□□□□ -0.33
PDLIM5-201ENST00000317968 TNIKQ9UKE5 1360 aa13□□□□□ -0.33
PDLIM5-201ENST00000317968 TRIM26Q12899 539 aaPredicted RBP13□□□□□ -0.33
PDLIM5-201ENST00000317968 ERCC6Q03468 1493 aa12.98□□□□□ -0.33
PDLIM5-201ENST00000317968 LAMC3Q9Y6N6 1575 aa12.96□□□□□ -0.33
PDLIM5-201ENST00000317968 MYT1LQ9UL68 1186 aa12.96□□□□□ -0.33
PDLIM5-201ENST00000317968 ZEB1P37275 1124 aaPredicted RBP12.93□□□□□ -0.34
PDLIM5-201ENST00000317968 RANGAP1P46060 587 aaPredicted RBP12.93□□□□□ -0.34
PDLIM5-201ENST00000317968 CUX2O14529 1486 aa12.92□□□□□ -0.34
PDLIM5-201ENST00000317968 SOGA1O94964 1423 aa12.9□□□□□ -0.34
PDLIM5-201ENST00000317968 PCGF6Q9BYE7 350 aa12.9□□□□□ -0.34
PDLIM5-201ENST00000317968 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.9□□□□□ -0.34
PDLIM5-201ENST00000317968 HNRNPUL2Q1KMD3 747 aaKnown RBP12.9□□□□□ -0.34
PDLIM5-201ENST00000317968 TOP2BQ02880 1626 aa12.88□□□□□ -0.35
PDLIM5-201ENST00000317968 CLIP1P30622 1438 aa12.88□□□□□ -0.35
PDLIM5-201ENST00000317968 CARMIL1Q5VZK9 1371 aa12.86□□□□□ -0.35
PDLIM5-201ENST00000317968 CEP162Q5TB80 1403 aa12.84□□□□□ -0.35
PDLIM5-201ENST00000317968 DNMBPQ6XZF7 1577 aa12.82□□□□□ -0.36
PDLIM5-201ENST00000317968 FGD5Q6ZNL6 1462 aa12.82□□□□□ -0.36
PDLIM5-201ENST00000317968 MRC2Q9UBG0 1479 aa12.8□□□□□ -0.36
PDLIM5-201ENST00000317968 TTBK1Q5TCY1 1321 aaPredicted RBP12.8□□□□□ -0.36
PDLIM5-201ENST00000317968 SYNJ1O43426 1573 aa12.8□□□□□ -0.36
PDLIM5-201ENST00000317968 RAPGEF2Q9Y4G8 1499 aa12.79□□□□□ -0.36
PDLIM5-201ENST00000317968 TOPBP1Q92547 1522 aa12.77□□□□□ -0.37
PDLIM5-201ENST00000317968 CHMP7Q8WUX9 453 aaPredicted RBP12.77□□□□□ -0.37
PDLIM5-201ENST00000317968 CUX1P39880 1505 aa12.76□□□□□ -0.37
PDLIM5-201ENST00000317968 ERICH3Q5RHP9 1530 aa12.76□□□□□ -0.37
PDLIM5-201ENST00000317968 BIVM-ERCC5R4GMW8 1640 aa12.76□□□□□ -0.37
PDLIM5-201ENST00000317968 CDK11AQ9UQ88 783 aaPredicted RBP12.75□□□□□ -0.37
PDLIM5-201ENST00000317968 FHAD1B1AJZ9 1412 aa12.75□□□□□ -0.37
PDLIM5-201ENST00000317968 KIF21BO75037 1637 aa12.75□□□□□ -0.37
PDLIM5-201ENST00000317968 FBLN2P98095 1184 aa12.73□□□□□ -0.37
PDLIM5-201ENST00000317968 IFT140Q96RY7 1462 aa12.72□□□□□ -0.37
PDLIM5-201ENST00000317968 NESP48681 1621 aa12.72□□□□□ -0.37
PDLIM5-201ENST00000317968 IGF1RP08069 1367 aa12.71□□□□□ -0.37
PDLIM5-201ENST00000317968 ABCA10Q8WWZ4 1543 aa12.71□□□□□ -0.38
PDLIM5-201ENST00000317968 GAPVD1Q14C86 1478 aa12.7□□□□□ -0.38
PDLIM5-201ENST00000317968 TDRD9Q8NDG6 1382 aaKnown RBP12.7□□□□□ -0.38
PDLIM5-201ENST00000317968 POLA1P09884 1462 aaPredicted RBP12.69□□□□□ -0.38
PDLIM5-201ENST00000317968 PRDM2Q13029 1718 aa12.69□□□□□ -0.38
PDLIM5-201ENST00000317968 VPS8Q8N3P4 1428 aa12.69□□□□□ -0.38
PDLIM5-201ENST00000317968 PRXQ9BXM0 1461 aa12.68□□□□□ -0.38
PDLIM5-201ENST00000317968 CCER1Q8TC90 406 aaPredicted RBP12.66□□□□□ -0.38
PDLIM5-201ENST00000317968 GRIN2BQ13224 1484 aa12.65□□□□□ -0.38
PDLIM5-201ENST00000317968 RUSC2Q8N2Y8 1516 aa12.65□□□□□ -0.38
PDLIM5-201ENST00000317968 FMN1Q68DA7 1419 aa12.64□□□□□ -0.39
PDLIM5-201ENST00000317968 ACIN1Q9UKV3 1341 aaKnown RBP12.63□□□□□ -0.39
PDLIM5-201ENST00000317968 NPM1P06748 294 aaKnown RBP eCLIP12.62□□□□□ -0.39
PDLIM5-201ENST00000317968 DNAJC5BQ9UF47 199 aa12.62□□□□□ -0.39
PDLIM5-201ENST00000317968 RAD54L2Q9Y4B4 1467 aa12.62□□□□□ -0.39
PDLIM5-201ENST00000317968 CARMIL2Q6F5E8 1435 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms