RNA–Protein interactions for RNA: ENST00000514743.5

PDLIM5-219, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2 BASIC

Gene PDLIM5, Length 3,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-219ENST00000514743 NISCHQ9Y2I1 1504 aa15.47■□□□□ 0.07
PDLIM5-219ENST00000514743 CHIC1Q5VXU3 224 aa13.97□□□□□ -0.17
PDLIM5-219ENST00000514743 AEBP2Q6ZN18 517 aaPredicted RBP13.72□□□□□ -0.21
PDLIM5-219ENST00000514743 PELP1Q8IZL8 1130 aaKnown RBP13.35□□□□□ -0.27
PDLIM5-219ENST00000514743 CCDC180Q9P1Z9 1646 aa13.33□□□□□ -0.28
PDLIM5-219ENST00000514743 MYT1Q01538 1121 aa13.21□□□□□ -0.29
PDLIM5-219ENST00000514743 ZCCHC6Q5VYS8 1495 aaKnown RBP13.09□□□□□ -0.31
PDLIM5-219ENST00000514743 SHROOM4Q9ULL8 1493 aa12.9□□□□□ -0.34
PDLIM5-219ENST00000514743 DCAF1Q9Y4B6 1507 aa12.76□□□□□ -0.37
PDLIM5-219ENST00000514743 TTBK1Q5TCY1 1321 aaPredicted RBP12.74□□□□□ -0.37
PDLIM5-219ENST00000514743 PHF23Q9BUL5 403 aaPredicted RBP12.7□□□□□ -0.38
PDLIM5-219ENST00000514743 PRKCSHP14314 528 aaPredicted RBP12.64□□□□□ -0.39
PDLIM5-219ENST00000514743 MYO15BQ96JP2 1530 aa12.55□□□□□ -0.4
PDLIM5-219ENST00000514743 DCAF8L2P0C7V8 631 aa12.55□□□□□ -0.4
PDLIM5-219ENST00000514743 SLC24A1O60721 1099 aa12.55□□□□□ -0.4
PDLIM5-219ENST00000514743 SUPT5HO00267 1087 aaKnown RBP12.54□□□□□ -0.4
PDLIM5-219ENST00000514743 EHMT2Q96KQ7 1210 aa12.4□□□□□ -0.42
PDLIM5-219ENST00000514743 ABCC9O60706 1549 aa12.36□□□□□ -0.43
PDLIM5-219ENST00000514743 ERICH6Q7L0X2 663 aa12.35□□□□□ -0.43
PDLIM5-219ENST00000514743 SCRIBQ14160 1630 aa12.35□□□□□ -0.43
PDLIM5-219ENST00000514743 APLP2Q06481 763 aa12.26□□□□□ -0.45
PDLIM5-219ENST00000514743 NACADO15069 1562 aa12.26□□□□□ -0.45
PDLIM5-219ENST00000514743 BCL11AQ9H165 835 aa12.16□□□□□ -0.46
PDLIM5-219ENST00000514743 RSF1Q96T23 1441 aaPredicted RBP12.14□□□□□ -0.47
PDLIM5-219ENST00000514743 RB1CC1Q8TDY2 1594 aa12.07□□□□□ -0.48
PDLIM5-219ENST00000514743 UNC13AQ9UPW8 1703 aa12.05□□□□□ -0.48
PDLIM5-219ENST00000514743 CECR2Q9BXF3 1484 aa12.03□□□□□ -0.48
PDLIM5-219ENST00000514743 MROH2BQ7Z745 1585 aa12.01□□□□□ -0.49
PDLIM5-219ENST00000514743 FAM9AQ8IZU1 332 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-219ENST00000514743 HRCP23327 699 aa11.98□□□□□ -0.49
PDLIM5-219ENST00000514743 WIZO95785 1651 aa11.97□□□□□ -0.49
PDLIM5-219ENST00000514743 SCAF1Q9H7N4 1312 aaKnown RBP11.96□□□□□ -0.49
PDLIM5-219ENST00000514743 BAZ1AQ9NRL2 1556 aaPredicted RBP11.91□□□□□ -0.5
PDLIM5-219ENST00000514743 DAXXQ9UER7 740 aaPredicted RBP11.89□□□□□ -0.51
PDLIM5-219ENST00000514743 EIF4G1Q04637 1599 aaKnown RBP11.86□□□□□ -0.51
PDLIM5-219ENST00000514743 SMARCA4P51532 1647 aa11.84□□□□□ -0.51
PDLIM5-219ENST00000514743 BICRAQ9NZM4 1560 aa11.81□□□□□ -0.52
PDLIM5-219ENST00000514743 LOC105371045A0A1W2PR82 267 aa11.81□□□□□ -0.52
PDLIM5-219ENST00000514743 TOP2AP11388 1531 aaKnown RBP11.78□□□□□ -0.52
PDLIM5-219ENST00000514743 KCNA4P22459 653 aa11.73□□□□□ -0.53
PDLIM5-219ENST00000514743 SMARCA2P51531 1590 aa11.72□□□□□ -0.53
PDLIM5-219ENST00000514743 TRIM41Q8WV44 630 aa11.72□□□□□ -0.53
PDLIM5-219ENST00000514743 PLPPR3Q6T4P5 718 aa11.71□□□□□ -0.53
PDLIM5-219ENST00000514743 PCGF6Q9BYE7 350 aa11.71□□□□□ -0.54
PDLIM5-219ENST00000514743 EIF5BO60841 1220 aaKnown RBP11.68□□□□□ -0.54
PDLIM5-219ENST00000514743 PPARGC1BQ86YN6 1023 aaKnown RBP11.68□□□□□ -0.54
PDLIM5-219ENST00000514743 PEG3Q9GZU2 1588 aa11.67□□□□□ -0.54
PDLIM5-219ENST00000514743 CCDC88BA6NC98 1476 aa11.67□□□□□ -0.54
PDLIM5-219ENST00000514743 CENPBP07199 599 aaPredicted RBP11.65□□□□□ -0.54
PDLIM5-219ENST00000514743 ABCC8Q09428 1581 aa11.62□□□□□ -0.55
PDLIM5-219ENST00000514743 PABPN1Q86U42 306 aaKnown RBP eCLIP11.6□□□□□ -0.55
PDLIM5-219ENST00000514743 ATAD2BQ9ULI0 1458 aa11.5□□□□□ -0.57
PDLIM5-219ENST00000514743 ADRA2BP18089 450 aa11.5□□□□□ -0.57
PDLIM5-219ENST00000514743 CSRNP3Q8WYN3 585 aa11.5□□□□□ -0.57
PDLIM5-219ENST00000514743 TRIM26Q12899 539 aaPredicted RBP11.49□□□□□ -0.57
PDLIM5-219ENST00000514743 PLEKHG5O94827 1062 aa11.46□□□□□ -0.57
PDLIM5-219ENST00000514743 RTN4Q9NQC3 1192 aaKnown RBP11.44□□□□□ -0.58
PDLIM5-219ENST00000514743 BAZ1BQ9UIG0 1483 aaKnown RBP11.44□□□□□ -0.58
PDLIM5-219ENST00000514743 SYNJ1O43426 1573 aa11.43□□□□□ -0.58
PDLIM5-219ENST00000514743 SOGA1O94964 1423 aa11.43□□□□□ -0.58
PDLIM5-219ENST00000514743 RUSC2Q8N2Y8 1516 aa11.4□□□□□ -0.58
PDLIM5-219ENST00000514743 WRNQ14191 1432 aaPredicted RBP eCLIP11.38□□□□□ -0.59
PDLIM5-219ENST00000514743 EEA1Q15075 1411 aa11.36□□□□□ -0.59
PDLIM5-219ENST00000514743 HMGXB3Q12766 1538 aa11.36□□□□□ -0.59
PDLIM5-219ENST00000514743 ANP32EQ9BTT0 268 aa11.36□□□□□ -0.59
PDLIM5-219ENST00000514743 ACIN1Q9UKV3 1341 aaKnown RBP11.33□□□□□ -0.59
PDLIM5-219ENST00000514743 GTF3C3Q9Y5Q9 886 aa11.32□□□□□ -0.6
PDLIM5-219ENST00000514743 BIVM-ERCC5R4GMW8 1640 aa11.32□□□□□ -0.6
PDLIM5-219ENST00000514743 CEP162Q5TB80 1403 aa11.31□□□□□ -0.6
PDLIM5-219ENST00000514743 NCAPD3P42695 1498 aa11.31□□□□□ -0.6
PDLIM5-219ENST00000514743 KIF21BO75037 1637 aa11.31□□□□□ -0.6
PDLIM5-219ENST00000514743 TOP2BQ02880 1626 aa11.31□□□□□ -0.6
PDLIM5-219ENST00000514743 TNIKQ9UKE5 1360 aa11.3□□□□□ -0.6
PDLIM5-219ENST00000514743 GOLGA3Q08378 1498 aa11.28□□□□□ -0.6
PDLIM5-219ENST00000514743 PRDM2Q13029 1718 aa11.27□□□□□ -0.6
PDLIM5-219ENST00000514743 UBE2Q2Q8WVN8 375 aa11.25□□□□□ -0.61
PDLIM5-219ENST00000514743 ANO8Q9HCE9 1232 aaPredicted RBP11.25□□□□□ -0.61
PDLIM5-219ENST00000514743 PODXL2Q9NZ53 605 aa11.25□□□□□ -0.61
PDLIM5-219ENST00000514743 CEP164Q9UPV0 1460 aa11.23□□□□□ -0.61
PDLIM5-219ENST00000514743 NEUROD1Q13562 356 aa11.23□□□□□ -0.61
PDLIM5-219ENST00000514743 CUX1P39880 1505 aa11.19□□□□□ -0.62
PDLIM5-219ENST00000514743 CFTRP13569 1480 aa11.19□□□□□ -0.62
PDLIM5-219ENST00000514743 RAPGEF2Q9Y4G8 1499 aa11.17□□□□□ -0.62
PDLIM5-219ENST00000514743 ZEB1P37275 1124 aaPredicted RBP11.16□□□□□ -0.62
PDLIM5-219ENST00000514743 UBTFP17480 764 aaKnown RBP11.15□□□□□ -0.62
PDLIM5-219ENST00000514743 SLC4A1APQ9BWU0 796 aaKnown RBP11.14□□□□□ -0.63
PDLIM5-219ENST00000514743 ERICH3Q5RHP9 1530 aa11.13□□□□□ -0.63
PDLIM5-219ENST00000514743 CC2D2AQ9P2K1 1620 aa11.12□□□□□ -0.63
PDLIM5-219ENST00000514743 PRXQ9BXM0 1461 aa11.11□□□□□ -0.63
PDLIM5-219ENST00000514743 CLIP1P30622 1438 aa11.1□□□□□ -0.63
PDLIM5-219ENST00000514743 PKNOX2Q96KN3 472 aa11.1□□□□□ -0.63
PDLIM5-219ENST00000514743 VPS8Q8N3P4 1428 aa11.08□□□□□ -0.64
PDLIM5-219ENST00000514743 PPP6R1Q9UPN7 881 aa11.05□□□□□ -0.64
PDLIM5-219ENST00000514743 SENP3Q9H4L4 574 aaPredicted RBP11.04□□□□□ -0.64
PDLIM5-219ENST00000514743 NCBP3Q53F19 620 aaKnown RBP11.04□□□□□ -0.64
PDLIM5-219ENST00000514743 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.03□□□□□ -0.64
PDLIM5-219ENST00000514743 CADPSQ9ULU8 1353 aa11.03□□□□□ -0.64
PDLIM5-219ENST00000514743 KIF27Q86VH2 1401 aa11.03□□□□□ -0.64
PDLIM5-219ENST00000514743 ARAP1Q96P48 1450 aa11.02□□□□□ -0.64
PDLIM5-219ENST00000514743 CCDC136Q96JN2 1154 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms