Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 EML3-212ENST00000494176 2901 ntTSL 2 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
SMKR1H3BMG3 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 ZNF815P-204ENST00000434898 1737 ntBASIC13.96□□□□□ -0.17
SMKR1H3BMG3 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SMKR1H3BMG3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 AC004854.2-201ENST00000608450 1441 ntBASIC13.96□□□□□ -0.18
SMKR1H3BMG3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 GAS2L1P2-201ENST00000436355 1356 ntBASIC13.96□□□□□ -0.18
SMKR1H3BMG3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
SMKR1H3BMG3 ABALON-201ENST00000629058 1903 ntBASIC13.96□□□□□ -0.18
SMKR1H3BMG3 LINC02228-203ENST00000641970 1355 ntBASIC13.96□□□□□ -0.18
SMKR1H3BMG3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 UBE2DNL-204ENST00000602536 740 ntBASIC13.95□□□□□ -0.18
SMKR1H3BMG3 AL031432.3-201ENST00000607698 485 ntBASIC13.95□□□□□ -0.18
SMKR1H3BMG3 AC016405.3-201ENST00000607710 860 ntBASIC13.95□□□□□ -0.18
SMKR1H3BMG3 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SMKR1H3BMG3 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 AC018553.1-201ENST00000616682 1458 ntBASIC13.94□□□□□ -0.18
SMKR1H3BMG3 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SMKR1H3BMG3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms