Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL12A1Q99715 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.72■□□□□ 0.27
COL12A1Q99715 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL12A1Q99715 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
COL12A1Q99715 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
COL12A1Q99715 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
COL12A1Q99715 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL12A1Q99715 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL12A1Q99715 UPF3AP3-201ENST00000420996 769 ntBASIC16.72■□□□□ 0.27
COL12A1Q99715 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.72■□□□□ 0.27
COL12A1Q99715 AC024243.1-201ENST00000609234 778 ntBASIC16.72■□□□□ 0.27
COL12A1Q99715 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.72■□□□□ 0.27
COL12A1Q99715 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
COL12A1Q99715 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.72■□□□□ 0.27
COL12A1Q99715 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL12A1Q99715 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL12A1Q99715 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
COL12A1Q99715 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC16.72■□□□□ 0.27
COL12A1Q99715 MIR662-201ENST00000384847 95 ntBASIC16.71■□□□□ 0.27
COL12A1Q99715 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
COL12A1Q99715 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.71■□□□□ 0.27
COL12A1Q99715 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL12A1Q99715 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL12A1Q99715 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL12A1Q99715 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL12A1Q99715 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL12A1Q99715 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.71■□□□□ 0.27
COL12A1Q99715 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.71■□□□□ 0.27
COL12A1Q99715 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.71■□□□□ 0.27
COL12A1Q99715 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.71■□□□□ 0.27
COL12A1Q99715 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.71■□□□□ 0.27
COL12A1Q99715 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL12A1Q99715 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC16.71■□□□□ 0.26
COL12A1Q99715 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL12A1Q99715 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL12A1Q99715 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.71■□□□□ 0.26
COL12A1Q99715 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.71■□□□□ 0.26
COL12A1Q99715 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
COL12A1Q99715 DNAJB3-202ENST00000449667 1266 ntBASIC16.71■□□□□ 0.26
COL12A1Q99715 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.71■□□□□ 0.26
COL12A1Q99715 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.71■□□□□ 0.26
COL12A1Q99715 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.71■□□□□ 0.26
COL12A1Q99715 RNF126P1-202ENST00000569893 925 ntBASIC16.71■□□□□ 0.26
COL12A1Q99715 PHGDH-210ENST00000641115 1638 ntBASIC16.71■□□□□ 0.26
COL12A1Q99715 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC16.7■□□□□ 0.26
COL12A1Q99715 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL12A1Q99715 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.7■□□□□ 0.26
COL12A1Q99715 AC074051.2-201ENST00000565115 352 ntBASIC16.7■□□□□ 0.26
COL12A1Q99715 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL12A1Q99715 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
COL12A1Q99715 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.7■□□□□ 0.26
COL12A1Q99715 AC239800.4-201ENST00000603712 296 ntBASIC16.7■□□□□ 0.26
COL12A1Q99715 TP73-AS1-207ENST00000624167 988 ntBASIC16.7■□□□□ 0.26
COL12A1Q99715 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
COL12A1Q99715 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL12A1Q99715 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.7■□□□□ 0.26
COL12A1Q99715 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.69■□□□□ 0.26
COL12A1Q99715 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.69■□□□□ 0.26
COL12A1Q99715 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.69■□□□□ 0.26
COL12A1Q99715 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
COL12A1Q99715 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COL12A1Q99715 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
COL12A1Q99715 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.69■□□□□ 0.26
COL12A1Q99715 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.69■□□□□ 0.26
COL12A1Q99715 AC092667.1-201ENST00000434301 2586 ntBASIC16.69■□□□□ 0.26
COL12A1Q99715 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
COL12A1Q99715 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.69■□□□□ 0.26
COL12A1Q99715 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.69■□□□□ 0.26
COL12A1Q99715 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.69■□□□□ 0.26
COL12A1Q99715 DPP3P2-201ENST00000416030 1696 ntBASIC16.69■□□□□ 0.26
COL12A1Q99715 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL12A1Q99715 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
COL12A1Q99715 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.68■□□□□ 0.26
COL12A1Q99715 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.68■□□□□ 0.26
COL12A1Q99715 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL12A1Q99715 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL12A1Q99715 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.68■□□□□ 0.26
COL12A1Q99715 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL12A1Q99715 STK25-234ENST00000535007 2459 ntTSL 2 BASIC16.68■□□□□ 0.26
COL12A1Q99715 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL12A1Q99715 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL12A1Q99715 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.68■□□□□ 0.26
COL12A1Q99715 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.68■□□□□ 0.26
COL12A1Q99715 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.68■□□□□ 0.26
COL12A1Q99715 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.68■□□□□ 0.26
COL12A1Q99715 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL12A1Q99715 AL117328.2-201ENST00000624617 1940 ntBASIC16.68■□□□□ 0.26
COL12A1Q99715 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL12A1Q99715 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL12A1Q99715 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL12A1Q99715 AC018712.1-201ENST00000455767 687 ntBASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms